Xenome

Description

The Xenome module parses results generated by Xenome, and is currently restricted to the log from xenome classify.

Note - MultiQC parses the standard out from Xenome, hence one has to redirect command line output to a file in order to use it with the MultiQC module. Also note that the tool does not register any sample name information in the output, so MultiQC attempts to fetch the sample name from the file name by default.

For example, if your Xenome command was:

xenome classify -P idx --pairs -i in_1.fastq -i in_2.fastq > sample.txt

Then the sample name in the report will be sample, which is the base name of the file.

File search patterns

xenome:
  contents: B	G	H	M	count	percent	class
  num_lines: 2