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Supported Tool

WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.


The WhatsHap module parses results generated by WhatsHap, and is currently restricted to the output from whatshap stats --tsv.

File search patterns

  contents: "#sample\tchromosome\tfile_name\tvariants\tphased\tunphased\tsingletons"
  num_lines: 1