MultiQC logo

WhatsHap

Supported Tool

WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads. ---

Description

The WhatsHap module parses results generated by WhatsHap, and is currently restricted to the output from whatshap stats --tsv.

File search patterns

whatshap/stats:
  contents: "#sample\tchromosome\tfile_name\tvariants\tphased\tunphased\tsingletons"
  num_lines: 1