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Supported Tool

WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads. ---


The WhatsHap module parses results generated by WhatsHap, and is currently restricted to the output from whatshap stats --tsv.

File search patterns

  contents: "#sample\tchromosome\tfile_name\tvariants\tphased\tunphased\tsingletons"
  num_lines: 1