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Stacks

Supported Tool

Stacks is a software for analyzing restriction enzyme-based data (e.g. RAD-seq)

Description

Very important note

This module will only work with Stacks version 2.1 or greater. Furthermore, this module is designed to only parse some of the output from the denovo_map pipeline. If you are missing some functionality, please submit an issue on the MultiQC github page

File search patterns

stacks/gstacks:
  fn: gstacks.log.distribs
  contents: BEGIN effective_coverages_per_sample
stacks/populations:
  fn: populations.log.distribs
  contents: BEGIN missing_samples_per_loc_prefilters
stacks/sumstats:
  fn: "*.sumstats_summary.tsv"
  contents: "# Pop ID\tPrivate\tNum_Indv\tVar\tStdErr\tP\tVar"
  max_filesize: 1000000