Stacks
Supported Tool
Analyzes restriction enzyme-based data (e.g. RAD-seq)
This module is designed to only parse some of the output from the Stacks denovo_map pipeline.
The module works with Stacks version 2.1 or greater.
If you are missing some functionality, please submit an issue on the MultiQC github page
File search patterns
stacks/gstacks:
contents: BEGIN effective_coverages_per_sample
fn: gstacks.log.distribs
stacks/populations:
contents: BEGIN missing_samples_per_loc_prefilters
fn: populations.log.distribs
stacks/sumstats:
contents: "# Pop ID\tPrivate\tNum_Indv\tVar\tStdErr\tP\tVar"
fn: "*.sumstats_summary.tsv"
max_filesize: 1000000