Sickle
Supported Tool
A windowed adaptive trimming tool for FASTQ files using quality
The stdout can be captured by directing it to a file e.g. sickle command 2> sickle_out.log
The module generates the sample names based on the filenames.
File search patterns
sickle:
contents_re: 'FastQ \w*\s?records kept: .*'
num_lines: 2