Windowed Adaptive Trimming for FastQ files using quality
The Sickle module parses standard error generated by
windowed Adaptive Trimming for fastq files using quality. StdOut can be captured by
directing it to a file e.g.
sickle command 2> sickle_out.log
The module generates the sample names based on the filenames.
File search patterns
sickle: contents_re: "FastQ \\w*\\s?records kept: .*" num_lines: 2