Sentieon
Supported Tool
Sentieon-dnaseq produces many outputs. This module deals with 3 Picard equivalents which do not transfer well to MultiQC. The code for each script is split into its own file and adds a section to the module output if logs are found.
Description
The Sentieon module parses output from the Sentieon dna-seq suite of tools, which themselves are implementations of certain Picard metrics Picard, a set of Java command line tools for manipulating high-throughput sequencing data.
Supported commands:
InsertSizeMetricsGcBiasMetricsAlignmentSummaryMetrics
File search patterns
sentieon/alignment_metrics:
contents: --algo AlignmentStat
shared: true
sentieon/insertsize:
contents: --algo InsertSizeMetricAlgo
shared: true
sentieon/gcbias:
contents: --algo GCBias
shared: true