Salmon
Supported Tool
Quantifies expression of transcripts using RNA-seq data
The Salmon module parses meta_info.json, lib_format_counts.json and flenDist.txt files, if found.
Note
Note that meta_info.json must be within a directory called either aux_info or aux and will be ignored
otherwise.
File search patterns
salmon/fld:
fn: flenDist.txt
salmon/lfc:
fn: lib_format_counts.json
salmon/meta:
contents: salmon_version
fn: meta_info.json
max_filesize: 50000
num_lines: 10