Rockhopper is a comprehensive and user-friendly system for computational analysis of bacterial RNA-seq data.
Rockhopper aligns reads to coding sequences, rRNAs, tRNAs, and miscellaneous RNAs on both the sense and anti-sense strand. These statistics are summarized in the Rockhopper bar plot in this module.
File search patterns
rockhopper: fn: summary.txt contents: Number of gene-pairs predicted to be part of the same operon max_filesize: 500000