Fast, efficient RNA-Seq metrics for quality control and process optimization
The RSeQC module parses results generated by RNA-SeQC, (not to be confused with RSeQC, which MultiQC also supports).
RNA-SeQC is a java program which computes a series of quality control metrics for RNA-seq data.
This module shows the Spearman correlation heatmap if both Spearman and Pearson’s are found. To plot Pearson’s by default instead, add the following to your MultiQC config file:
rna_seqc: default_correlation: pearson
File search patterns
rna_seqc/metrics_v1: fn: "*metrics.tsv" contents: "Sample\tNote\t" shared: true rna_seqc/metrics_v2: fn: "*metrics.tsv" contents: High Quality Ambiguous Alignment Rate shared: true rna_seqc/coverage: fn_re: meanCoverageNorm_(high|medium|low)\.txt rna_seqc/correlation: fn_re: corrMatrix(Pearson|Spearman)\.txt