Pangolin
Supported Tool
Uses variant calls to assign SARS-CoV-2 genome sequences to global lineages
Implements the dynamic nomenclature of SARS-CoV-2 lineages, known as the Pango nomenclature. It allows a user to assign a SARS-CoV-2 genome sequence the most likely lineage (Pango lineage) to SARS-CoV-2 query sequences.
File search patterns
pangolin:
contents: pangolin_version
num_lines: 1