pairtools
Supported Tool
Toolkit for Chromatin Conformation Capture experiments. Handles short-reads paired reference alignments, extracts 3C-specific information, and perform common tasks such as sorting, filtering, and deduplication
The module parses summary statistics generated by pairtools’s dedup and stats tools.
File search patterns
pairtools:
contents:
- "total_single_sided_mapped\t"
- "cis\t"
- "trans\t"
- pair_types/
num_lines: 20