OptiType
Supported Tool
Precision HLA typing from next-generation sequencing data
Description
OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.
File search patterns
optitype:
contents: "\tA1\tA2\tB1\tB2\tC1\tC2\tReads\tObjective"
num_lines: 1