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Supported Tool

Viral genome alignment, clade assignment, mutation calling, and quality checks


Nextclade assigns input sequences to SARS-Cov-2 clades based on differences between the input sequences and Nextstrain reference sequences. In addition, it judges the validity of the samples by performing several quality control checks on the input sequences.

File search patterns

  contents: seqName;clade;
  num_lines: 1