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NanoStat

Supported Tool

Calculate various statistics from a long read sequencing dataset in FastQ, BAM or albacore sequencing summary format (supports NanoPack; NanoPlot, NanoComp).

Description

The module parses text output generated by NanoStat or NanoPlot, the programs within the NanoPack family for summarising results of sequencing on Oxford Nanopore methods (MinION, PromethION etc.)

File search patterns

nanostat:
  max_filesize: 4096
  contents_re: Metrics\s+dataset\s*
  num_lines: 1
nanostat/legacy:
  max_filesize: 4096
  contents_re: General summary:\s*
  num_lines: 1