Command line tool to annotate miRNAs with a standard mirna/isomir naming
This tool is dedicated to the creation and management of miRNA alignment output using the standardized GFF3 format (https://github.com/miRTop/mirGFF3). A unified miRNA alignment format allows to easily compare the output of different alignement tools.
Currently, mirtop can convert into mirGFF3 the outputs of commonly used pipelines, such as seqbuster, isomiR-SEA, sRNAbench, Prost! as well as BAM files.
File search patterns
mirtop: fn: "*_mirtop_stats.log"