Kaiju
Supported Tool
Taxonomic classification for metagenomics
The module parses output generated by kaiju2table, e.g:
kaiju -i R1.fq.gz -j R2.fq.gz -o output_kaiju.txt
kaiju2table -t nodes.dmp -n names.dmp -r species -o kaiju2table_species.txt output_kaiju.txt
kaiju2table -t nodes.dmp -n names.dmp -r phylum -o kaiju2table_phylum.txt output_kaiju.txtFile search patterns
kaiju:
contents_re: file\tpercent\treads\ttaxon_id\ttaxon_name
num_lines: 1