JCVI Genome Annotation
A tool to compute statistics on genome annotation.
JCVI Genome Annotation provides quantitative measures for the assessment of genome annotation.
The JCVI module parses the output of
python -m jcvi.annotation.stats genestats <input.gff>.
The file name is used as the sample name.
If the output from the
python -m jcvi.annotation.stats stats <input.gff> is present in the same directory,
it is used to draw complementary plots.
A typical result directory will contain:
The JCVI module has been tested with output from JCVI v1.0.9.
File search patterns
contents: " o % GC % of genome Average size (bp) Median size
(bp) Number Total length (Mb)"