HUMID
Supported Tool
High-performance UMI deduplicator
Description
HUMID is a tool to quickly and easily remove duplicate reads from FastQ files, with or without UMIs.
File search patterns
humid/stats:
fn: stats.dat
contents: "total: "
num_lines: 1
humid/neighbours:
fn: neigh.dat
contents_re: "[0-9]+ [0-9]+"
num_lines: 1
humid/counts:
fn: counts.dat
contents_re: "[0-9]+ [0-9]+"
num_lines: 1
humid/clusters:
fn: clusters.dat
contents_re: "[0-9]+ [0-9]+"
num_lines: 1