HTSeq
Supported Tool
HTSeq is a Python package that provides infrastructure to process data from high-throughput sequencing assays. HTSeq-count takes a file with aligned sequencing reads, plus a list of genomic features and counts how many reads map to each feature.
Description
HTSeq is a general purpose Python package that provides infrastructure to
process data from high-throughput sequencing assays. htseq-count is a tool
that is part of the main HTSeq package - it takes a file with aligned sequencing
reads, plus a list of genomic features and counts how many reads map to each feature.
File search patterns
htseq:
contents_re: ^(feature\tcount|\w+.*\t\d+)$
num_lines: 1