HOPS
Supported Tool
This tool performs screening of output from the ancient DNA optimised BLAST-replacement tool MALT, to identify taxa that have expected ancient DNA characteristics.
Description
This module takes the JSON output of the HOPS postprocessing R script (Version >= 0.34). to recreate the possible positives heatmap, with the heat intensity representing the number of ‘ancient DNA characteristics’ categories (small edit distance, damage, both edit distance and aDNA damage) that a particular taxon has.
File search patterns
hops:
fn: heatmap_overview_Wevid.json