HiC-Pro
Supported Tool
HiC-Pro is an optimized and flexible pipeline for Hi-C data processing.
Description
The HiC-Pro module parses results generated by HiC-Pro, a tool for efficient processing and quality control of Hi-C data.
Please note - because this module shares sample identifiers across multiple files,
the --fn_as_s_name / config.use_filename_as_sample_name functionality has been disabled and has no effect.
File search patterns
hicpro/mmapstat:
fn: "*.mmapstat"
hicpro/mpairstat:
fn: "*.mpairstat"
hicpro/mergestat:
fn: "*.mergestat"
hicpro/mRSstat:
fn: "*.mRSstat"
hicpro/assplit:
fn: "*.assplit.stat"