HiC-Pro
Supported Tool
Pipeline for Hi-C data processing
Note - because this module shares sample identifiers across multiple files,
the --fn_as_s_name / config.use_filename_as_sample_name functionality has been disabled and has no effect.
The MultiQC module is supported since HiC-Pro v2.11.0.
File search patterns
hicpro/assplit:
fn: "*assplit.stat"
hicpro/mRSstat:
contents: Valid_interaction_pairs
fn: "*RSstat"
hicpro/mergestat:
contents: valid_interaction
fn: "*.mergestat"
num_lines: 10
hicpro/mmapstat:
contents: total_R
fn: "*mapstat"
num_lines: 10
hicpro/mpairstat:
contents: Total_pairs_processed
fn: "*pairstat"
num_lines: 10