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HiC-Pro

Supported Tool

HiC-Pro is an optimized and flexible pipeline for Hi-C data processing.

Description

The HiC-Pro module parses results generated by HiC-Pro, a tool for efficient processing and quality control of Hi-C data.

Please note - because this module shares sample identifiers across multiple files, the --fn_as_s_name / config.use_filename_as_sample_name functionality has been disabled and has no effect.

File search patterns

hicpro/mmapstat:
  fn: "*.mmapstat"
hicpro/mpairstat:
  fn: "*.mpairstat"
hicpro/mergestat:
  fn: "*.mergestat"
hicpro/mRSstat:
  fn: "*.mRSstat"
hicpro/assplit:
  fn: "*.assplit.stat"