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Supported Tool

A set of tools for low-coverage whole genome sequencing imputation


The program GLIMPSE2 is based on the GLIMPSE model and designed for reference panels containing hundreads of thousands of reference samples, with a special focus on rare variants.

The concordance rates values are displayed in a scatter plot, with the option to switch between the different concordance metrics.

The supported files are generated from the GLIMPSE2_concordance command. The following files are for the moment supported:

  • *.error.spl.txt
  • *.error.grp.txt

File search patterns

  fn: "*.error.spl.txt.gz"
  num_lines: 1
  fn: "*.error.grp.txt.gz"
  num_lines: 1