GffCompare
Supported Tool
Tool to compare, merge and annotate one or more GFF files with a reference annotation in GFF format
The program gffcompare can be used to compare, merge, annotate and estimate accuracy
of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF).
The Sensitivity / Precision values are displayed in a single plot, different loci levels can be switched by choosing a different dataset.
Please use gffcompare only with single samples.
Multi-Sample comparisons are not correctly rendered by this MultiQC module.
Note that exported data in multiqc_data/multiqc_gffcompare.{tsv,yaml,json} only works when
exporting with YAML or JSON - the default .tsv output will not contain any data.
Please use -k yaml or -k json to export in a structured format.
It is hoped to refactor this code in a future release - please submit a PR if you are interested.
File search patterns
gffcompare:
contents: "# gffcompare"
fn: "*.stats"
num_lines: 2