Disambiguate
Supported Tool
Disambiguation algorithm for reads aligned to two species (e.g. human and mouse genomes) from Tophat, Hisat2, STAR or BWA mem.
Description
Disambiguation algorithm for reads aligned to two species (e.g. human and mouse genomes) from Tophat, Hisat2, STAR or BWA mem. Both a Python and C++ implementation are offered.
The MultiQC module for Disambiguate parses the summary files generated by Disambiguate.
File search patterns
disambiguate:
contents: unique species A pairs
num_lines: 2