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CheckQC

Supported Tool

CheckQC is a program designed to check a set of quality criteria against an Illumina runfolder.

Description

The CheckQC module parses results generated by CheckQC, a program designed to check a set of quality criteria against an Illumina runfolder.

It parses a CheckQC JSON file, so make sure to use CheckQC with the --json flag and collect the stdout in a file.

File search patterns

checkqc:
  contents: instrument_and_reagent_type
  fn: "*.json"