CCS is a PacBio tool that generates highly accurate single-molecule consensus reads (HiFi Reads).
The CCS module parses the report file generated by ccs, a PacBio tool to generate highly accurate single-molecule consensus reads (HiFi Reads).
CCS takes multiple subreads of the same SMRTbell molecule and combines them using a statistical model to produce one highly accurate consensus sequence, also called HiFi read, with base quality values. This tool powers the Circular Consensus Sequencing workflow in SMRT Link.
File search patterns
ccs/v4: contents: ZMWs generating CCS num_lines: 2 max_filesize: 1024 ccs/v5: contents: '"id": "ccs_processing"' fn: "*.json"