Bismark
Supported Tool
Maps bisulfite converted sequence reads and determine cytosine methylation states
File search patterns
bismark/align:
fn: "*_[SP]E_report.txt"
bismark/bam2nuc:
fn: "*.nucleotide_stats.txt"
bismark/dedup:
fn: "*.deduplication_report.txt"
bismark/m_bias:
fn: "*M-bias.txt"
bismark/meth_extract:
fn: "*_splitting_report.txt"