MultiQC logo


Supported Tool

bcl2fastq can be used to both demultiplex data and convert BCL files to FASTQ file formats for downstream analysis.


There are two versions of this software: bcl2fastq for MiSeq and HiSeq sequencing systems running RTA versions earlier than 1.8, and bcl2fastq2 for Illumina sequencing systems running RTA version 1.18.54 and above. This module currently only covers output from the latter.

File search patterns

  fn: Stats.json
  contents: DemuxResults
  num_lines: 300