BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF.
The Bcftools module parses results generated by Bcftools, a suite of programs for interacting with variant call data.
Collapse complementary substitutions
In non-strand-specific data, reporting the total numbers of occurences for both changes
in a comlementary pair - like
T>G - might not bring any additional information.
To collapse such statistics in the substitutions plot, you can add the following section into
bcftools: collapse_complementary_changes: true
MultiQC will sum up all complementary changes and show only
in the resulting plot.
File search patterns
bcftools/stats: contents: This file was produced by bcftools stats shared: true