Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.
The AfterQC module parses results generated by AfterQC. AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.
File search patterns
afterqc: fn: "*.json" contents: allow_mismatch_in_poly num_lines: 10000