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Supported Tool

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.


The AfterQC module parses results generated by AfterQC. AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.

File search patterns

  fn: "*.json"
  contents: allow_mismatch_in_poly
  num_lines: 10000