FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A012.C8DRAANXX.s_2.r_2.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A012.C8DRAANXX.s_2.r_2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35472550
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA57750.040.7474646-47
TCGCCGT60500.038.74778744-45
GTCGCCG65700.037.08468644-45
GAGCGTC181450.035.3154569
GATCGGA229100.032.9306451
GCCGTAT75150.032.81720746-47
GGTCGCC76300.032.28359242-43
AGAGCGT202750.032.0749058
ATCGGAA239350.031.2469732
TGGTCGC78750.030.9014542-43
CCGTATC78700.030.39186948-49
TCGGAAG243600.029.9690763
GTGGTCG83550.029.9450940-41
AAGAGCG235650.029.4147077
CGGAAGA246900.028.845574
CGTATCA86700.028.34242848-49
CGGTGGT101050.025.93675638-39
TCGGTGG107100.025.27714538-39
CTCGGTG113000.023.9836936-37
TCTCGGT112200.023.73046536-37