Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A012.C8DRAANXX.s_2.r_1.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35472550 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC | 77817 | 0.21937244432666947 | TruSeq Adapter, Index 12 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 24275 | 0.0 | 41.37192 | 1 |
TATGCCG | 12660 | 0.0 | 39.175312 | 46-47 |
ATCGGAA | 25755 | 0.0 | 39.170486 | 2 |
TCGGAAG | 26285 | 0.0 | 38.403255 | 3 |
CGGAAGA | 26580 | 0.0 | 37.885223 | 4 |
GCCGTCT | 13580 | 0.0 | 36.69679 | 48-49 |
ATGCCGT | 13780 | 0.0 | 36.185566 | 46-47 |
TGCCGTC | 13770 | 0.0 | 35.887955 | 48-49 |
CTCGTAT | 13610 | 0.0 | 35.627365 | 42-43 |
CGTATGC | 13975 | 0.0 | 35.528645 | 44-45 |
TCTCGTA | 13710 | 0.0 | 35.15047 | 40-41 |
TCGTATG | 15125 | 0.0 | 33.29782 | 42-43 |
ATCTCGT | 14845 | 0.0 | 32.02213 | 40-41 |
CCGTCTT | 15500 | 0.0 | 31.999504 | 50-51 |
AATCTCG | 15190 | 0.0 | 31.681368 | 38-39 |
CGTCTTC | 15850 | 0.0 | 31.555698 | 50-51 |
CGTCTGA | 20015 | 0.0 | 24.933388 | 16-17 |
GTATGCC | 20605 | 0.0 | 24.775291 | 44-45 |
ACACGTC | 21135 | 0.0 | 23.991983 | 12-13 |
AGAGCAC | 43380 | 0.0 | 23.56994 | 8 |