FastQCFastQC Report
Mon 18 Apr 2016
Sample-2.A006.C8LFMANXX.s_3.r_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-2.A006.C8LFMANXX.s_3.r_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52316898
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC10829092.0699029212320657TruSeq Adapter, Index 6 (100% over 50bp)
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT820260.15678681866803343No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1356950.0102.865871
ATCGGAA1383250.0100.8784562
TCGGAAG1393400.0100.073323
CGGAAGA1394350.099.871144
AGAGCAC1644650.085.221498
GAGCACA1672650.083.809129
GAAGAGC1729600.080.8259666
AAGAGCA2001450.070.174657
GGAAGAG2010600.069.636325
TATGCCG1232500.056.35336746-47
CGCCAAT1239800.056.22752432-33
GCCGTCT1229800.056.18219448-49
TGCCGTC1232600.056.13179848-49
ATGCCGT1238900.056.0238346-47
TCTCGTA1204350.055.8942140-41
GTCACGC1251800.055.87155528-29
CGTATGC1247100.055.8462144-45
CTCGTAT1232650.055.81530842-43
TATCTCG1204100.055.81440738-39
TCGTATG1257800.055.5483342-43