FastQCFastQC Report
Mon 18 Apr 2016
Sample-3.A012.C8H0KANXX.s_2.r_2.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-3.A012.C8H0KANXX.s_2.r_2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88983957
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG2610997129.342335270615127Illumina Single End PCR Primer 1 (100% over 50bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGGCGCCG7317070.8222909214972313Illumina Single End PCR Primer 1 (98% over 50bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTGGCCG2623400.2948171882264125Illumina Single End PCR Primer 1 (98% over 50bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGGCG2187370.24581622055760005Illumina Single End PCR Primer 1 (98% over 50bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGGGGTCGCCG1843930.2072204993086563Illumina Single End PCR Primer 1 (98% over 50bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTTGCCG1508830.16956202565817566Illumina Single End PCR Primer 1 (98% over 50bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCCG1013350.11388007840559394Illumina Single End PCR Primer 1 (98% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA33112450.0117.462991
GAGCGTC32577500.0116.728599
TCGGAAG33273850.0116.619973
ATCGGAA33305450.0116.6127552
AGAGCGT32744750.0116.256468
CGGAAGA33409000.0115.9255754
AAGAGCG33571750.0115.170927
GAAGAGC34009150.0113.7532966
GGAAGAG35142650.0110.273815
GAGCGGC402000.072.559469
GAGCGCC225100.069.931459
GAGCGAC379950.060.611499
TCGCCGT26227950.059.1499844-45
GCCGTAT26686400.059.14167846-47
GGTCGCC28163200.059.13234342-43
CGTATCA26635850.059.07859448-49
GTGGTCG28265650.059.021940-41
ATCTCGG30292250.058.9854834-35
CGGTGGT28919450.058.96373738-39
CTCGGTG29805700.058.94629336-37