FastQCFastQC Report
Mon 18 Apr 2016
Sample-2.A002.C8LFMANXX.s_3.r_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-2.A002.C8LFMANXX.s_3.r_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47111116
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG909390.19303087619490908Illumina Single End PCR Primer 1 (100% over 50bp)
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT822050.1744917271753868No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC208800.076.9174969
GATCGGA228800.074.817551
ATCGGAA248850.068.41992
AGAGCGT237250.068.195328
TCGGAAG263250.064.406023
CGGAAGA268450.062.2916534
AAGAGCG267800.061.4819157
CGCCGTA111350.049.5103546-47
GTCGCCG122350.048.51206244-45
TCGCCGT112500.048.15797844-45
GGTCGCC135250.044.2149242-43
GCGTCGT183650.043.12649510-11
CGTCGTG185200.042.51012412-13
TGGTCGC138300.042.4008542-43
AGCGTCG189250.042.2746810-11
GTGGTCG146400.041.5529840-41
GCCGTAT135300.041.40600246-47
GTCGTGT206200.038.6423412-13
CCGTATC143150.038.551848-49
CGTGTAG211550.038.12905514-15