FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A012.C8DRAANXX.s_2.r_1.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A012.C8DRAANXX.s_2.r_1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35472550
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC778170.21937244432666947TruSeq Adapter, Index 12 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA242750.041.371921
TATGCCG126600.039.17531246-47
ATCGGAA257550.039.1704862
TCGGAAG262850.038.4032553
CGGAAGA265800.037.8852234
GCCGTCT135800.036.6967948-49
ATGCCGT137800.036.18556646-47
TGCCGTC137700.035.88795548-49
CTCGTAT136100.035.62736542-43
CGTATGC139750.035.52864544-45
TCTCGTA137100.035.1504740-41
TCGTATG151250.033.2978242-43
ATCTCGT148450.032.0221340-41
CCGTCTT155000.031.99950450-51
AATCTCG151900.031.68136838-39
CGTCTTC158500.031.55569850-51
CGTCTGA200150.024.93338816-17
GTATGCC206050.024.77529144-45
ACACGTC211350.023.99198312-13
AGAGCAC433800.023.569948