FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A006.C8DRAANXX.s_2.r_1.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A006.C8DRAANXX.s_2.r_1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34760244
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG52300.023.38025346-47
TGCCGTC58950.020.64193548-49
GCCGTCT58700.020.52711148-49
CGCCAAT59450.020.16427232-33
ATGCCGT60950.020.11094946-47
CGTATGC61550.019.9615944-45
CTCGTAT62300.019.3384542-43
TATCTCG62250.018.73011638-39
GTCACGC65400.018.51183528-29
TCTCGTA65750.018.0522740-41
TCGTATG69300.017.2992242-43
GATCGGA147300.016.9940661
ATCTCGT72250.016.88109840-41
ACGCCAA73550.016.78397432-33
AGCTTTT2064250.016.457481
AGCTTTC1540200.016.3106481
ATCGGAA156650.015.9582092
CCGTCTT79450.015.61612950-51
CGGAAGA162250.015.5163994
TCGGAAG161200.015.5077313