FastQCFastQC Report
Mon 18 Apr 2016
Sample-3.A006.C8H0KANXX.s_2.r_2.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-3.A006.C8H0KANXX.s_2.r_2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70954559
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG17446262.4587933807044027Illumina Single End PCR Primer 1 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC2395450.0102.457049
GATCGGA2462450.0101.045281
AGAGCGT2439200.0100.663258
AAGAGCG2506300.098.784857
ATCGGAA2516550.098.699142
TCGGAAG2536100.097.954733
CGGAAGA2554900.097.039694
GAAGAGC3068250.080.868966
GGAAGAG3661650.068.04165
TCGCCGT1825950.057.4030144-45
GCCGTAT1858800.057.1537846-47
GGTCGCC1949000.057.09959842-43
CGTATCA1866050.056.71636248-49
CGCCGTA1830350.056.58081446-47
GTCGCCG1923850.056.52359444-45
GTGGTCG1981200.056.35653740-41
TGGTCGC1933000.055.62180342-43
CCGTATC1856850.055.5588248-49
CGGTGGT2063150.055.24642638-39
ATCTCGG2154300.055.078734-35