Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
34760244 |
34760244 |
Not Truncated |
24339936 |
24236337 |
Truncated |
10420308 |
10523907 |
Too short to map |
579570 |
539500 |
Average length of truncated sequence |
65.67 |
66.68 |
|
Read 1 |
Read 2 |
Unique Alignments |
25926210 |
25637256 |
Multiple Alignments |
5230796 |
5121683 |
Failed To Align |
3023668 |
3461805 |
Paired |
18473566 |
18473566 |
Filtering
|
Di-Tag Count |
Valid Pairs |
13106391 |
Invalid Pairs |
5367175 |
Same Circularised |
220527 |
Same Fragment Dangling Ends |
408217 |
Same Fragment Internal |
2075370 |
Re-ligation |
961388 |
Contiguous Sequence |
65086 |
Wrong Size |
1636587 |
Total Pairs |
18473566 |
Di-tag length Distribution
De-duplication
Percentage uniques: 99.17
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
13106391 |
12998003 |
Cis-close (< 10Kbp) |
2063334 |
2043926 |
Cis-far (> 10Kbp) |
8173491 |
8107586 |
Trans |
2869566 |
2846491 |