FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A007.C8DRAANXX.s_2.r_1.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A007.C8DRAANXX.s_2.r_1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31000250
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG43300.019.23907346-47
GCCGTCT51250.016.8933348-49
CGTATGC50450.016.56968944-45
TGCCGTC50950.016.40885448-49
ATGCCGT55300.015.65603846-47
CTCGTAT54600.014.76463342-43
TCTCGTA54700.014.73761840-41
TCGTATG60100.014.353888542-43
AGCTTGT671800.013.8320051
CATCTCG59900.013.20815138-39
AGCTTTC1092750.013.1727151
AGCTTGG644500.012.5127811
ATCTCGT63750.012.50546840-41
AGCTTGC527550.012.462091
CCGTCTT69500.012.2010350-51
CGTCTTC73500.011.94183550-51
AGCTTTT1542600.011.9123971
GATCGGA150400.011.6117791
ATCGGAA156750.011.2396352
AGCTTTG1068650.011.0212391