Basic Statistics
Measure | Value |
---|---|
Filename | Sample-2.A002.C8LFMANXX.s_3.r_1.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47111116 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC | 149171 | 0.3166365237452664 | TruSeq Adapter, Index 2 (100% over 50bp) |
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT | 72725 | 0.15436908775415126 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 24620 | 0.0 | 78.50246 | 1 |
ATCGGAA | 26555 | 0.0 | 72.63502 | 2 |
TCGGAAG | 27880 | 0.0 | 69.16411 | 3 |
CGGAAGA | 28495 | 0.0 | 67.64898 | 4 |
TATGCCG | 20540 | 0.0 | 46.837975 | 46-47 |
TGCCGTC | 21280 | 0.0 | 45.055702 | 48-49 |
CCGATGT | 21235 | 0.0 | 44.772247 | 32-33 |
GCCGTCT | 21520 | 0.0 | 44.63616 | 48-49 |
CTCGTAT | 21290 | 0.0 | 44.51707 | 42-43 |
ATGCCGT | 21655 | 0.0 | 44.49501 | 46-47 |
CACCGAT | 21510 | 0.0 | 44.338142 | 30-31 |
CGTATGC | 21780 | 0.0 | 44.171352 | 44-45 |
ACCGATG | 21525 | 0.0 | 44.127586 | 32-33 |
TATCTCG | 21165 | 0.0 | 43.711582 | 38-39 |
GTCACCG | 22070 | 0.0 | 43.30747 | 28-29 |
TCTCGTA | 21495 | 0.0 | 43.206573 | 40-41 |
TCGTATG | 23325 | 0.0 | 41.602436 | 42-43 |
TCACCGA | 22940 | 0.0 | 41.535355 | 30-31 |
ATCTCGT | 22395 | 0.0 | 41.324093 | 40-41 |
CGATGTA | 23375 | 0.0 | 40.686043 | 34-35 |