Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A019.C8DRAANXX.s_2.r_2.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28583413 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 2550 | 0.0 | 33.832615 | 46-47 |
TCGCCGT | 2905 | 0.0 | 30.824648 | 44-45 |
GTCGCCG | 3065 | 0.0 | 30.57439 | 44-45 |
GGTCGCC | 3610 | 0.0 | 26.617857 | 42-43 |
GCCGTAT | 3710 | 0.0 | 24.857964 | 46-47 |
GAGCGTC | 9755 | 0.0 | 24.763186 | 9 |
TGGTCGC | 3890 | 0.0 | 22.866482 | 42-43 |
GTGGTCG | 4350 | 0.0 | 22.15815 | 40-41 |
GATCGGA | 12610 | 0.0 | 22.129189 | 1 |
AGAGCGT | 11415 | 0.0 | 21.370548 | 8 |
CCGTATC | 4250 | 0.0 | 20.789558 | 48-49 |
ATCGGAA | 13545 | 0.0 | 19.942728 | 2 |
TCGGAAG | 13915 | 0.0 | 19.11314 | 3 |
AAGAGCG | 13370 | 0.0 | 19.002214 | 7 |
CGGAAGA | 14005 | 0.0 | 18.480509 | 4 |
CGTATCA | 5065 | 0.0 | 18.442846 | 48-49 |
CGGTGGT | 5710 | 0.0 | 17.088953 | 38-39 |
TCGGTGG | 5965 | 0.0 | 17.006763 | 38-39 |
AGCTTTT | 166120 | 0.0 | 16.726408 | 1 |
CTCGGTG | 6265 | 0.0 | 16.097424 | 36-37 |