Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
43542862 |
43542862 |
Not Truncated |
30710435 |
31083922 |
Truncated |
12832427 |
12458940 |
Too short to map |
589333 |
546108 |
Average length of truncated sequence |
67.14 |
67.74 |
|
Read 1 |
Read 2 |
Unique Alignments |
34098328 |
33591997 |
Multiple Alignments |
7182895 |
7071302 |
Failed To Align |
1672306 |
2333455 |
Paired |
27167640 |
27167640 |
Filtering
|
Di-Tag Count |
Valid Pairs |
20377000 |
Invalid Pairs |
6790640 |
Same Circularised |
362905 |
Same Fragment Dangling Ends |
484984 |
Same Fragment Internal |
2016944 |
Re-ligation |
2664241 |
Contiguous Sequence |
184268 |
Wrong Size |
1077298 |
Total Pairs |
27167640 |
Di-tag length Distribution
De-duplication
Percentage uniques: 95.36
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
20377000 |
19432336 |
Cis-close (< 10Kbp) |
4281053 |
4073201 |
Cis-far (> 10Kbp) |
14101172 |
13454368 |
Trans |
1994775 |
1904767 |