Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
28583413 |
28583413 |
Not Truncated |
19432306 |
19261576 |
Truncated |
9151107 |
9321837 |
Too short to map |
519100 |
488517 |
Average length of truncated sequence |
65.11 |
66.38 |
|
Read 1 |
Read 2 |
Unique Alignments |
21667602 |
21491634 |
Multiple Alignments |
4404215 |
4342639 |
Failed To Align |
1992496 |
2260623 |
Paired |
16053923 |
16053923 |
Filtering
|
Di-Tag Count |
Valid Pairs |
11766363 |
Invalid Pairs |
4287560 |
Same Circularised |
223187 |
Same Fragment Dangling Ends |
305385 |
Same Fragment Internal |
1541376 |
Re-ligation |
1070842 |
Contiguous Sequence |
72067 |
Wrong Size |
1074703 |
Total Pairs |
16053923 |
Di-tag length Distribution
De-duplication
Percentage uniques: 99.08
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
11766363 |
11658185 |
Cis-close (< 10Kbp) |
1830414 |
1811982 |
Cis-far (> 10Kbp) |
7850293 |
7779338 |
Trans |
2085656 |
2066865 |