Basic Statistics
Measure | Value |
---|---|
Filename | Sample-3.A012.C8H0KANXX.s_2.r_2.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 88983957 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 26109971 | 29.342335270615127 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGGCGCCG | 731707 | 0.8222909214972313 | Illumina Single End PCR Primer 1 (98% over 50bp) |
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTGGCCG | 262340 | 0.2948171882264125 | Illumina Single End PCR Primer 1 (98% over 50bp) |
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGGCG | 218737 | 0.24581622055760005 | Illumina Single End PCR Primer 1 (98% over 50bp) |
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGGGGTCGCCG | 184393 | 0.2072204993086563 | Illumina Single End PCR Primer 1 (98% over 50bp) |
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTTGCCG | 150883 | 0.16956202565817566 | Illumina Single End PCR Primer 1 (98% over 50bp) |
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCCG | 101335 | 0.11388007840559394 | Illumina Single End PCR Primer 1 (98% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 3311245 | 0.0 | 117.46299 | 1 |
GAGCGTC | 3257750 | 0.0 | 116.72859 | 9 |
TCGGAAG | 3327385 | 0.0 | 116.61997 | 3 |
ATCGGAA | 3330545 | 0.0 | 116.612755 | 2 |
AGAGCGT | 3274475 | 0.0 | 116.25646 | 8 |
CGGAAGA | 3340900 | 0.0 | 115.925575 | 4 |
AAGAGCG | 3357175 | 0.0 | 115.17092 | 7 |
GAAGAGC | 3400915 | 0.0 | 113.753296 | 6 |
GGAAGAG | 3514265 | 0.0 | 110.27381 | 5 |
GAGCGGC | 40200 | 0.0 | 72.55946 | 9 |
GAGCGCC | 22510 | 0.0 | 69.93145 | 9 |
GAGCGAC | 37995 | 0.0 | 60.61149 | 9 |
TCGCCGT | 2622795 | 0.0 | 59.14998 | 44-45 |
GCCGTAT | 2668640 | 0.0 | 59.141678 | 46-47 |
GGTCGCC | 2816320 | 0.0 | 59.132343 | 42-43 |
CGTATCA | 2663585 | 0.0 | 59.078594 | 48-49 |
GTGGTCG | 2826565 | 0.0 | 59.0219 | 40-41 |
ATCTCGG | 3029225 | 0.0 | 58.98548 | 34-35 |
CGGTGGT | 2891945 | 0.0 | 58.963737 | 38-39 |
CTCGGTG | 2980570 | 0.0 | 58.946293 | 36-37 |