Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A005.C8DRAANXX.s_2.r_1.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26780491 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC | 110453 | 0.4124382932336827 | TruSeq Adapter, Index 5 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 22050 | 0.0 | 68.32608 | 1 |
ATCGGAA | 23130 | 0.0 | 65.59033 | 2 |
TCGGAAG | 23515 | 0.0 | 64.136795 | 3 |
CGGAAGA | 23820 | 0.0 | 63.03753 | 4 |
TATGCCG | 15560 | 0.0 | 47.99305 | 46-47 |
GCCGTCT | 15850 | 0.0 | 46.570763 | 48-49 |
TGCCGTC | 16070 | 0.0 | 46.192398 | 48-49 |
CTCGTAT | 15705 | 0.0 | 45.971134 | 42-43 |
CGTATGC | 16345 | 0.0 | 45.829857 | 44-45 |
ATGCCGT | 16230 | 0.0 | 45.64519 | 46-47 |
TCTCGTA | 15850 | 0.0 | 44.048992 | 40-41 |
TCGTATG | 17030 | 0.0 | 43.87917 | 42-43 |
CCGTCTT | 17470 | 0.0 | 42.510433 | 50-51 |
ATCTCGT | 16715 | 0.0 | 42.01862 | 40-41 |
CGTCTTC | 17840 | 0.0 | 41.51202 | 50-51 |
AGAGCAC | 36365 | 0.0 | 41.479614 | 8 |
GATCTCG | 17345 | 0.0 | 40.399887 | 38-39 |
GAGCACA | 38020 | 0.0 | 39.595943 | 9 |
CGTCTGA | 19850 | 0.0 | 37.740665 | 16-17 |
GAAGAGC | 41335 | 0.0 | 36.636124 | 6 |