FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A019.C8DRAANXX.s_2.r_1.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A019.C8DRAANXX.s_2.r_1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28583413
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG61550.031.61342448-49
TGCCGTC63500.030.45655850-51
GATCGGA129850.029.9736461
CGTATGC65650.029.86555746-47
GCCGTCT66300.028.990850-51
ATGCCGT68250.028.29201548-49
ATCGGAA141250.027.9364952
TCGGAAG146150.026.8776453
AACGATC57800.026.39826438-39
CGGAAGA149000.026.1620774
CTCGTAT62900.026.10757844-45
TCGTATG76300.025.49948144-45
TCTCGTA61900.024.84599342-43
CCGTCTT79700.024.15495152-53
CGTCTTC81900.023.36077752-53
ATCTCGT66600.023.31593142-43
ACGATCT65950.022.9105138-39
GATCTCG72350.021.1750340-41
AGTCACG95000.020.75924128-29
GTCACGT97950.020.07328828-29