FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A006.C8DRAANXX.s_2.r_2.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A006.C8DRAANXX.s_2.r_2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34760244
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA22650.026.53145646-47
TCGCCGT26800.022.75605644-45
GTCGCCG27750.022.1914344-45
AGCTTTT1958650.019.51751
GGTCGCC36500.017.60511242-43
GCCGTAT37350.016.40795946-47
AGCTTAA960600.015.9617221
AGCTTTC1592100.015.9575211
TGGTCGC39250.015.91686542-43
AATCCCG103150.015.631762540-41
AGCTTTG1485800.015.4012811
AGCTTTA1223950.015.3371131
AGCTTGT933900.015.2585421
GAGCGTC108450.014.9226959
AGCTTAT1083650.014.8740041
AGCTTCT1774200.014.8394771
GTGGTCG43950.014.68854440-41
CGAAATC102500.014.56994154-55
AGCTTGC683800.014.5135911
CCGTATC41650.014.49969848-49