FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A007.C8DRAANXX.s_2.r_2.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A007.C8DRAANXX.s_2.r_2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31000250
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA18050.020.10757446-47
TCGCCGT22600.016.58590544-45
GTCGCCG23950.016.27207244-45
AGCTTTT1379050.013.3532721
AGCTTGT693400.013.3515841
AGCTTAT755450.013.0346491
GGTCGCC33050.012.78185742-43
AGCTTTC1137850.012.5915311
GCCGTAT32250.012.45320446-47
AGCTTTA866850.012.1557471
AGCTTGC552300.012.065631
AGCTTAA674350.011.7964981
AGCTTGG672700.011.7369851
GTGGTCG38200.011.60379240-41
TGGTCGC34900.011.59285942-43
AGCTTTG1077800.011.3112561
AGCTTAG639700.010.9287021
GCTTGTG319150.010.5332082
AGCTTCT1256600.010.3788811
GCTTTCT835450.010.3692662