Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
47111116 |
47111116 |
Not Truncated |
31237828 |
31646350 |
Truncated |
15873288 |
15464766 |
Too short to map |
836605 |
786618 |
Average length of truncated sequence |
65.43 |
66.06 |
|
Read 1 |
Read 2 |
Unique Alignments |
36086617 |
35678265 |
Multiple Alignments |
8345082 |
8251704 |
Failed To Align |
1842812 |
2394529 |
Paired |
28544901 |
28544901 |
Filtering
|
Di-Tag Count |
Valid Pairs |
22513818 |
Invalid Pairs |
6031083 |
Same Circularised |
308462 |
Same Fragment Dangling Ends |
459609 |
Same Fragment Internal |
1428287 |
Re-ligation |
2630424 |
Contiguous Sequence |
194022 |
Wrong Size |
1010279 |
Total Pairs |
28544901 |
Di-tag length Distribution
De-duplication
Percentage uniques: 91.42
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
22513818 |
20582567 |
Cis-close (< 10Kbp) |
4911940 |
4471280 |
Cis-far (> 10Kbp) |
15403286 |
14095464 |
Trans |
2198592 |
2015823 |