Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A002.C8DRAANXX.s_2.r_2.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28754600 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 2220 | 0.0 | 24.523048 | 46-47 |
TCGCCGT | 2440 | 0.0 | 22.068108 | 44-45 |
GTCGCCG | 2720 | 0.0 | 20.999485 | 44-45 |
AGCTTTT | 156630 | 0.0 | 20.45203 | 1 |
AGCTTAA | 75540 | 0.0 | 18.131538 | 1 |
AGCTTCT | 137475 | 0.0 | 17.930712 | 1 |
AGCTTTC | 127600 | 0.0 | 17.774958 | 1 |
AGCTTGT | 68405 | 0.0 | 17.62211 | 1 |
GCCGTAT | 3290 | 0.0 | 17.270853 | 46-47 |
GGTCGCC | 3495 | 0.0 | 17.109022 | 42-43 |
AGCTTTA | 96280 | 0.0 | 16.852154 | 1 |
AGCTTAT | 79880 | 0.0 | 16.818691 | 1 |
AATCCCG | 11100 | 0.0 | 16.670313 | 40-41 |
TGGTCGC | 3505 | 0.0 | 16.211445 | 42-43 |
GAGCGTC | 9215 | 0.0 | 16.206331 | 9 |
AGCTTGG | 65715 | 0.0 | 16.00752 | 1 |
AGCTTTG | 118360 | 0.0 | 15.588458 | 1 |
CGAAATC | 11200 | 0.0 | 15.538682 | 54-55 |
AGCTTGC | 53465 | 0.0 | 15.435234 | 1 |
AGCTTAG | 66375 | 0.0 | 15.373258 | 1 |