Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
28754600 |
28754600 |
Not Truncated |
21205631 |
21308433 |
Truncated |
7548969 |
7446167 |
Too short to map |
751623 |
698375 |
Average length of truncated sequence |
58.69 |
59.65 |
|
Read 1 |
Read 2 |
Unique Alignments |
21072845 |
20505141 |
Multiple Alignments |
4475271 |
4336149 |
Failed To Align |
2454861 |
3214935 |
Paired |
14383198 |
14383198 |
Filtering
|
Di-Tag Count |
Valid Pairs |
8935388 |
Invalid Pairs |
5447810 |
Same Circularised |
136087 |
Same Fragment Dangling Ends |
530246 |
Same Fragment Internal |
2442480 |
Re-ligation |
834795 |
Contiguous Sequence |
48328 |
Wrong Size |
1455874 |
Total Pairs |
14383198 |
Di-tag length Distribution
De-duplication
Percentage uniques: 99.21
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
8935388 |
8864466 |
Cis-close (< 10Kbp) |
1169666 |
1159324 |
Cis-far (> 10Kbp) |
5787588 |
5742469 |
Trans |
1978134 |
1962673 |