Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
26780491 |
26780491 |
Not Truncated |
18418678 |
18343710 |
Truncated |
8361813 |
8436781 |
Too short to map |
431302 |
407260 |
Average length of truncated sequence |
66.22 |
67.02 |
|
Read 1 |
Read 2 |
Unique Alignments |
20379141 |
20071745 |
Multiple Alignments |
4263954 |
4167422 |
Failed To Align |
1706094 |
2134064 |
Paired |
15245021 |
15245021 |
Filtering
|
Di-Tag Count |
Valid Pairs |
11314841 |
Invalid Pairs |
3930180 |
Same Circularised |
187236 |
Same Fragment Dangling Ends |
298334 |
Same Fragment Internal |
1580105 |
Re-ligation |
924315 |
Contiguous Sequence |
59919 |
Wrong Size |
880271 |
Total Pairs |
15245021 |
Di-tag length Distribution
De-duplication
Percentage uniques: 99.16
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
11314841 |
11219537 |
Cis-close (< 10Kbp) |
1509270 |
1495237 |
Cis-far (> 10Kbp) |
7304795 |
7243835 |
Trans |
2500776 |
2480465 |