FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A002.C8DRAANXX.s_2.r_2.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A002.C8DRAANXX.s_2.r_2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28754600
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA22200.024.52304846-47
TCGCCGT24400.022.06810844-45
GTCGCCG27200.020.99948544-45
AGCTTTT1566300.020.452031
AGCTTAA755400.018.1315381
AGCTTCT1374750.017.9307121
AGCTTTC1276000.017.7749581
AGCTTGT684050.017.622111
GCCGTAT32900.017.27085346-47
GGTCGCC34950.017.10902242-43
AGCTTTA962800.016.8521541
AGCTTAT798800.016.8186911
AATCCCG111000.016.67031340-41
TGGTCGC35050.016.21144542-43
GAGCGTC92150.016.2063319
AGCTTGG657150.016.007521
AGCTTTG1183600.015.5884581
CGAAATC112000.015.53868254-55
AGCTTGC534650.015.4352341
AGCTTAG663750.015.3732581