Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A012.C8DRAANXX.s_2.r_2.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35472550 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 5775 | 0.0 | 40.74746 | 46-47 |
TCGCCGT | 6050 | 0.0 | 38.747787 | 44-45 |
GTCGCCG | 6570 | 0.0 | 37.084686 | 44-45 |
GAGCGTC | 18145 | 0.0 | 35.315456 | 9 |
GATCGGA | 22910 | 0.0 | 32.930645 | 1 |
GCCGTAT | 7515 | 0.0 | 32.817207 | 46-47 |
GGTCGCC | 7630 | 0.0 | 32.283592 | 42-43 |
AGAGCGT | 20275 | 0.0 | 32.074905 | 8 |
ATCGGAA | 23935 | 0.0 | 31.246973 | 2 |
TGGTCGC | 7875 | 0.0 | 30.90145 | 42-43 |
CCGTATC | 7870 | 0.0 | 30.391869 | 48-49 |
TCGGAAG | 24360 | 0.0 | 29.969076 | 3 |
GTGGTCG | 8355 | 0.0 | 29.94509 | 40-41 |
AAGAGCG | 23565 | 0.0 | 29.414707 | 7 |
CGGAAGA | 24690 | 0.0 | 28.84557 | 4 |
CGTATCA | 8670 | 0.0 | 28.342428 | 48-49 |
CGGTGGT | 10105 | 0.0 | 25.936756 | 38-39 |
TCGGTGG | 10710 | 0.0 | 25.277145 | 38-39 |
CTCGGTG | 11300 | 0.0 | 23.98369 | 36-37 |
TCTCGGT | 11220 | 0.0 | 23.730465 | 36-37 |