FastQCFastQC Report
Mon 18 Apr 2016
Sample-3.A012.C8H0KANXX.s_2.r_1.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-3.A012.C8H0KANXX.s_2.r_1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88983957
Sequences flagged as poor quality0
Sequence length125
%GC38

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC3186965135.81505259425584TruSeq Adapter, Index 12 (100% over 50bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC1776160.19960451972258325TruSeq Adapter, Index 12 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATATCGTATGC1333110.14981464580182693TruSeq Adapter, Index 12 (98% over 50bp)
NATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC966250.10858698945024438TruSeq Adapter, Index 12 (98% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA33823250.0117.910891
ATCGGAA34188350.0116.6333852
TCGGAAG34198750.0116.5234763
CGGAAGA34208900.0116.423754
AGAGCAC34715300.0114.7826168
GAGCACA34691900.0114.778659
GAAGAGC34738700.0114.7660146
GGAAGAG35054450.0113.750415
AAGAGCA35130400.0113.472837
ATGCCGT33936750.058.71814746-47
GCCGTCT33934050.058.68947248-49
GCACACG34250500.058.55389810-11
AATCTCG33735450.058.55194538-39
ACGTCTG34176750.058.5336314-15
TCTCGTA33824100.058.5331640-41
TCGTATG34113700.058.5226242-43
ACACGTC34263950.058.5025512-13
TGCCGTC33938700.058.4727248-49
GTATGCC34105400.058.40193644-45
TATGCCG34035800.058.38416746-47