Basic Statistics
Measure | Value |
---|---|
Filename | Sample-2.A006.C8LFMANXX.s_3.r_1.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 52316898 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC | 1082909 | 2.0699029212320657 | TruSeq Adapter, Index 6 (100% over 50bp) |
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT | 82026 | 0.15678681866803343 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 135695 | 0.0 | 102.86587 | 1 |
ATCGGAA | 138325 | 0.0 | 100.878456 | 2 |
TCGGAAG | 139340 | 0.0 | 100.07332 | 3 |
CGGAAGA | 139435 | 0.0 | 99.87114 | 4 |
AGAGCAC | 164465 | 0.0 | 85.22149 | 8 |
GAGCACA | 167265 | 0.0 | 83.80912 | 9 |
GAAGAGC | 172960 | 0.0 | 80.825966 | 6 |
AAGAGCA | 200145 | 0.0 | 70.17465 | 7 |
GGAAGAG | 201060 | 0.0 | 69.63632 | 5 |
TATGCCG | 123250 | 0.0 | 56.353367 | 46-47 |
CGCCAAT | 123980 | 0.0 | 56.227524 | 32-33 |
GCCGTCT | 122980 | 0.0 | 56.182194 | 48-49 |
TGCCGTC | 123260 | 0.0 | 56.131798 | 48-49 |
ATGCCGT | 123890 | 0.0 | 56.02383 | 46-47 |
TCTCGTA | 120435 | 0.0 | 55.89421 | 40-41 |
GTCACGC | 125180 | 0.0 | 55.871555 | 28-29 |
CGTATGC | 124710 | 0.0 | 55.84621 | 44-45 |
CTCGTAT | 123265 | 0.0 | 55.815308 | 42-43 |
TATCTCG | 120410 | 0.0 | 55.814407 | 38-39 |
TCGTATG | 125780 | 0.0 | 55.54833 | 42-43 |