Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
31000250 |
31000250 |
Not Truncated |
24787262 |
24813011 |
Truncated |
6212988 |
6187239 |
Too short to map |
368533 |
338254 |
Average length of truncated sequence |
65.01 |
65.94 |
|
Read 1 |
Read 2 |
Unique Alignments |
22327487 |
21828226 |
Multiple Alignments |
4263821 |
4140992 |
Failed To Align |
4040409 |
4692778 |
Paired |
14621513 |
14621513 |
Filtering
|
Di-Tag Count |
Valid Pairs |
7029431 |
Invalid Pairs |
7592082 |
Same Circularised |
157241 |
Same Fragment Dangling Ends |
452563 |
Same Fragment Internal |
4031859 |
Re-ligation |
771757 |
Contiguous Sequence |
37367 |
Wrong Size |
2141295 |
Total Pairs |
14621513 |
Di-tag length Distribution
De-duplication
Percentage uniques: 99.27
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
7029431 |
6978457 |
Cis-close (< 10Kbp) |
882929 |
876396 |
Cis-far (> 10Kbp) |
4625450 |
4591811 |
Trans |
1521052 |
1510250 |