Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
52316898 |
52316898 |
Not Truncated |
32192721 |
32433590 |
Truncated |
20124177 |
19883308 |
Too short to map |
962947 |
914822 |
Average length of truncated sequence |
66.11 |
66.83 |
|
Read 1 |
Read 2 |
Unique Alignments |
39321762 |
39112933 |
Multiple Alignments |
8818185 |
8749902 |
Failed To Align |
3214004 |
3539241 |
Paired |
31163044 |
31163044 |
Filtering
|
Di-Tag Count |
Valid Pairs |
24532872 |
Invalid Pairs |
6630172 |
Same Circularised |
342377 |
Same Fragment Dangling Ends |
466229 |
Same Fragment Internal |
1777624 |
Re-ligation |
2867016 |
Contiguous Sequence |
207732 |
Wrong Size |
969194 |
Total Pairs |
31163044 |
Di-tag length Distribution
De-duplication
Percentage uniques: 87.14
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
24532872 |
21378250 |
Cis-close (< 10Kbp) |
5251509 |
4556068 |
Cis-far (> 10Kbp) |
16883070 |
14724374 |
Trans |
2398293 |
2097808 |