Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A005.C8DRAANXX.s_2.r_2.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26780491 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 54330 | 0.20287156049528743 | Illumina Single End PCR Primer 1 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGTC | 15230 | 0.0 | 62.42852 | 9 |
GATCGGA | 19230 | 0.0 | 58.755955 | 1 |
AGAGCGT | 17010 | 0.0 | 56.000668 | 8 |
ATCGGAA | 19875 | 0.0 | 55.202656 | 2 |
TCGGAAG | 20325 | 0.0 | 53.160797 | 3 |
AAGAGCG | 19270 | 0.0 | 53.138016 | 7 |
CGGAAGA | 20345 | 0.0 | 51.792522 | 4 |
CGCCGTA | 6845 | 0.0 | 49.893574 | 46-47 |
TCGCCGT | 6990 | 0.0 | 48.986267 | 44-45 |
GTCGCCG | 7535 | 0.0 | 47.890976 | 44-45 |
GGTCGCC | 8240 | 0.0 | 44.58779 | 42-43 |
GCCGTAT | 8170 | 0.0 | 42.930695 | 46-47 |
TGGTCGC | 8310 | 0.0 | 42.780224 | 42-43 |
GTGGTCG | 8810 | 0.0 | 42.277042 | 40-41 |
CCGTATC | 8405 | 0.0 | 40.27919 | 48-49 |
CGTATCA | 9115 | 0.0 | 38.088192 | 48-49 |
TCGGTGG | 10930 | 0.0 | 36.55376 | 38-39 |
CGGTGGT | 10395 | 0.0 | 36.37452 | 38-39 |
CTCGGTG | 10995 | 0.0 | 35.769463 | 36-37 |
TCTCGGT | 10935 | 0.0 | 35.34 | 36-37 |