Basic Statistics
Measure | Value |
---|---|
Filename | Sample-2.A006.C8LFMANXX.s_3.r_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 52316898 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 709824 | 1.3567776896864183 | Illumina Single End PCR Primer 1 (100% over 50bp) |
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT | 90749 | 0.17346020782807114 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGTC | 119150 | 0.0 | 104.15267 | 9 |
GATCGGA | 127845 | 0.0 | 101.37069 | 1 |
AGAGCGT | 123420 | 0.0 | 101.2 | 8 |
ATCGGAA | 129975 | 0.0 | 99.18084 | 2 |
TCGGAAG | 130705 | 0.0 | 98.40388 | 3 |
CGGAAGA | 129905 | 0.0 | 97.95162 | 4 |
AAGAGCG | 129330 | 0.0 | 97.77126 | 7 |
GAAGAGC | 162540 | 0.0 | 78.10214 | 6 |
GGAAGAG | 194165 | 0.0 | 66.04169 | 5 |
TCGCCGT | 75365 | 0.0 | 57.78176 | 44-45 |
CGCCGTA | 76725 | 0.0 | 57.451645 | 46-47 |
GTCGCCG | 82070 | 0.0 | 57.23361 | 44-45 |
GGTCGCC | 83115 | 0.0 | 56.922 | 42-43 |
GCCGTAT | 80000 | 0.0 | 56.39391 | 46-47 |
GTGGTCG | 85790 | 0.0 | 56.10615 | 40-41 |
TGGTCGC | 82485 | 0.0 | 55.946457 | 42-43 |
CCGTATC | 79905 | 0.0 | 55.33814 | 48-49 |
CGTATCA | 82275 | 0.0 | 54.890335 | 48-49 |
CGGTGGT | 90440 | 0.0 | 54.72116 | 38-39 |
TCGGTGG | 96850 | 0.0 | 54.354782 | 38-39 |