Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A019.C8DRAANXX.s_2.r_1.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28583413 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 6155 | 0.0 | 31.613424 | 48-49 |
TGCCGTC | 6350 | 0.0 | 30.456558 | 50-51 |
GATCGGA | 12985 | 0.0 | 29.973646 | 1 |
CGTATGC | 6565 | 0.0 | 29.865557 | 46-47 |
GCCGTCT | 6630 | 0.0 | 28.9908 | 50-51 |
ATGCCGT | 6825 | 0.0 | 28.292015 | 48-49 |
ATCGGAA | 14125 | 0.0 | 27.936495 | 2 |
TCGGAAG | 14615 | 0.0 | 26.877645 | 3 |
AACGATC | 5780 | 0.0 | 26.398264 | 38-39 |
CGGAAGA | 14900 | 0.0 | 26.162077 | 4 |
CTCGTAT | 6290 | 0.0 | 26.107578 | 44-45 |
TCGTATG | 7630 | 0.0 | 25.499481 | 44-45 |
TCTCGTA | 6190 | 0.0 | 24.845993 | 42-43 |
CCGTCTT | 7970 | 0.0 | 24.154951 | 52-53 |
CGTCTTC | 8190 | 0.0 | 23.360777 | 52-53 |
ATCTCGT | 6660 | 0.0 | 23.315931 | 42-43 |
ACGATCT | 6595 | 0.0 | 22.91051 | 38-39 |
GATCTCG | 7235 | 0.0 | 21.17503 | 40-41 |
AGTCACG | 9500 | 0.0 | 20.759241 | 28-29 |
GTCACGT | 9795 | 0.0 | 20.073288 | 28-29 |