Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
35472550 |
35472550 |
Not Truncated |
26472929 |
26422073 |
Truncated |
8999621 |
9050477 |
Too short to map |
526747 |
494718 |
Average length of truncated sequence |
65.39 |
66.30 |
|
Read 1 |
Read 2 |
Unique Alignments |
26504291 |
26142222 |
Multiple Alignments |
5362349 |
5264577 |
Failed To Align |
3079163 |
3571033 |
Paired |
19070455 |
19070455 |
Filtering
|
Di-Tag Count |
Valid Pairs |
11705308 |
Invalid Pairs |
7365147 |
Same Circularised |
163868 |
Same Fragment Dangling Ends |
663463 |
Same Fragment Internal |
3810160 |
Re-ligation |
976378 |
Contiguous Sequence |
55368 |
Wrong Size |
1695910 |
Total Pairs |
19070455 |
Di-tag length Distribution
De-duplication
Percentage uniques: 99.18
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
11705308 |
11609411 |
Cis-close (< 10Kbp) |
1272882 |
1261011 |
Cis-far (> 10Kbp) |
7060212 |
7003201 |
Trans |
3372214 |
3345199 |