Basic Statistics
Measure | Value |
---|---|
Filename | Sample-3.A006.C8H0KANXX.s_2.r_2.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 70954559 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 1744626 | 2.4587933807044027 | Illumina Single End PCR Primer 1 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGTC | 239545 | 0.0 | 102.45704 | 9 |
GATCGGA | 246245 | 0.0 | 101.04528 | 1 |
AGAGCGT | 243920 | 0.0 | 100.66325 | 8 |
AAGAGCG | 250630 | 0.0 | 98.78485 | 7 |
ATCGGAA | 251655 | 0.0 | 98.69914 | 2 |
TCGGAAG | 253610 | 0.0 | 97.95473 | 3 |
CGGAAGA | 255490 | 0.0 | 97.03969 | 4 |
GAAGAGC | 306825 | 0.0 | 80.86896 | 6 |
GGAAGAG | 366165 | 0.0 | 68.0416 | 5 |
TCGCCGT | 182595 | 0.0 | 57.40301 | 44-45 |
GCCGTAT | 185880 | 0.0 | 57.15378 | 46-47 |
GGTCGCC | 194900 | 0.0 | 57.099598 | 42-43 |
CGTATCA | 186605 | 0.0 | 56.716362 | 48-49 |
CGCCGTA | 183035 | 0.0 | 56.580814 | 46-47 |
GTCGCCG | 192385 | 0.0 | 56.523594 | 44-45 |
GTGGTCG | 198120 | 0.0 | 56.356537 | 40-41 |
TGGTCGC | 193300 | 0.0 | 55.621803 | 42-43 |
CCGTATC | 185685 | 0.0 | 55.55882 | 48-49 |
CGGTGGT | 206315 | 0.0 | 55.246426 | 38-39 |
ATCTCGG | 215430 | 0.0 | 55.0787 | 34-35 |