Whole-Genome Seq

The data from this report comes from an analysis of HapMap trio samples, run by the National Genomics Infrastructre (NGI) at SciLifeLab, Sweden. Initial quality control was done using FastQC and FastQ Screen. Reads were processed with GATK and the aligned reads analysed using Picard. Downstream QC was done using Qualimap BamQC and SnpEff.

You can download this report and / or the logs used to generate it, to try running MultiQC yourself. Note that the example report has some user-specific config settings, seen in the multiqc_config.yaml file.

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