FastQCFastQC Report
Mon 18 Apr 2016
Sample-2.A012.C8LFMANXX.s_3.r_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-2.A012.C8LFMANXX.s_3.r_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43542862
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG751090.17249440333067678Illumina Single End PCR Primer 1 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC243400.052.7134639
CGCCGTA93950.048.92539246-47
GATCGGA284500.048.2421571
AGAGCGT271300.048.0818638
GTCGCCG103650.047.70504844-45
TCGCCGT97250.047.5405344-45
ATCGGAA302850.045.2586632
TCGGAAG310850.043.6727563
AAGAGCG307050.043.646017
GGTCGCC117100.043.0894942-43
CGGAAGA314700.042.8153844
GCCGTAT115300.041.10447346-47
TGGTCGC119500.040.92948542-43
GTGGTCG126900.040.34272840-41
CCGTATC120750.038.188648-49
CGTATCA131000.036.4723248-49
CGGTGGT150350.034.9765538-39
TCGGTGG159300.034.8412738-39
CTCGGTG165600.032.83678436-37
TCTCGGT162800.032.6889336-37