Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A007.C8DRAANXX.s_2.r_1.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31000250 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 4330 | 0.0 | 19.239073 | 46-47 |
GCCGTCT | 5125 | 0.0 | 16.89333 | 48-49 |
CGTATGC | 5045 | 0.0 | 16.569689 | 44-45 |
TGCCGTC | 5095 | 0.0 | 16.408854 | 48-49 |
ATGCCGT | 5530 | 0.0 | 15.656038 | 46-47 |
CTCGTAT | 5460 | 0.0 | 14.764633 | 42-43 |
TCTCGTA | 5470 | 0.0 | 14.737618 | 40-41 |
TCGTATG | 6010 | 0.0 | 14.3538885 | 42-43 |
AGCTTGT | 67180 | 0.0 | 13.832005 | 1 |
CATCTCG | 5990 | 0.0 | 13.208151 | 38-39 |
AGCTTTC | 109275 | 0.0 | 13.172715 | 1 |
AGCTTGG | 64450 | 0.0 | 12.512781 | 1 |
ATCTCGT | 6375 | 0.0 | 12.505468 | 40-41 |
AGCTTGC | 52755 | 0.0 | 12.46209 | 1 |
CCGTCTT | 6950 | 0.0 | 12.20103 | 50-51 |
CGTCTTC | 7350 | 0.0 | 11.941835 | 50-51 |
AGCTTTT | 154260 | 0.0 | 11.912397 | 1 |
GATCGGA | 15040 | 0.0 | 11.611779 | 1 |
ATCGGAA | 15675 | 0.0 | 11.239635 | 2 |
AGCTTTG | 106865 | 0.0 | 11.021239 | 1 |