Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
47405891 |
47405891 |
Not Truncated |
31692250 |
32041603 |
Truncated |
15713641 |
15364288 |
Too short to map |
774880 |
730807 |
Average length of truncated sequence |
66.87 |
67.53 |
|
Read 1 |
Read 2 |
Unique Alignments |
36438532 |
36071030 |
Multiple Alignments |
8302457 |
8217328 |
Failed To Align |
1890022 |
2386726 |
Paired |
29027139 |
29027139 |
Filtering
|
Di-Tag Count |
Valid Pairs |
23270871 |
Invalid Pairs |
5756268 |
Same Circularised |
322640 |
Same Fragment Dangling Ends |
387458 |
Same Fragment Internal |
1178281 |
Re-ligation |
2622262 |
Contiguous Sequence |
199562 |
Wrong Size |
1046065 |
Total Pairs |
29027139 |
Di-tag length Distribution
De-duplication
Percentage uniques: 91.34
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
23270871 |
21256588 |
Cis-close (< 10Kbp) |
5061309 |
4598792 |
Cis-far (> 10Kbp) |
15933206 |
14571759 |
Trans |
2276356 |
2086037 |