Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A007.C8DRAANXX.s_2.r_2.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31000250 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 1805 | 0.0 | 20.107574 | 46-47 |
TCGCCGT | 2260 | 0.0 | 16.585905 | 44-45 |
GTCGCCG | 2395 | 0.0 | 16.272072 | 44-45 |
AGCTTTT | 137905 | 0.0 | 13.353272 | 1 |
AGCTTGT | 69340 | 0.0 | 13.351584 | 1 |
AGCTTAT | 75545 | 0.0 | 13.034649 | 1 |
GGTCGCC | 3305 | 0.0 | 12.781857 | 42-43 |
AGCTTTC | 113785 | 0.0 | 12.591531 | 1 |
GCCGTAT | 3225 | 0.0 | 12.453204 | 46-47 |
AGCTTTA | 86685 | 0.0 | 12.155747 | 1 |
AGCTTGC | 55230 | 0.0 | 12.06563 | 1 |
AGCTTAA | 67435 | 0.0 | 11.796498 | 1 |
AGCTTGG | 67270 | 0.0 | 11.736985 | 1 |
GTGGTCG | 3820 | 0.0 | 11.603792 | 40-41 |
TGGTCGC | 3490 | 0.0 | 11.592859 | 42-43 |
AGCTTTG | 107780 | 0.0 | 11.311256 | 1 |
AGCTTAG | 63970 | 0.0 | 10.928702 | 1 |
GCTTGTG | 31915 | 0.0 | 10.533208 | 2 |
AGCTTCT | 125660 | 0.0 | 10.378881 | 1 |
GCTTTCT | 83545 | 0.0 | 10.369266 | 2 |