Basic Statistics
Measure | Value |
---|---|
Filename | Sample-2.A002.C8LFMANXX.s_3.r_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47111116 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 90939 | 0.19303087619490908 | Illumina Single End PCR Primer 1 (100% over 50bp) |
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT | 82205 | 0.1744917271753868 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGTC | 20880 | 0.0 | 76.917496 | 9 |
GATCGGA | 22880 | 0.0 | 74.81755 | 1 |
ATCGGAA | 24885 | 0.0 | 68.4199 | 2 |
AGAGCGT | 23725 | 0.0 | 68.19532 | 8 |
TCGGAAG | 26325 | 0.0 | 64.40602 | 3 |
CGGAAGA | 26845 | 0.0 | 62.291653 | 4 |
AAGAGCG | 26780 | 0.0 | 61.481915 | 7 |
CGCCGTA | 11135 | 0.0 | 49.51035 | 46-47 |
GTCGCCG | 12235 | 0.0 | 48.512062 | 44-45 |
TCGCCGT | 11250 | 0.0 | 48.157978 | 44-45 |
GGTCGCC | 13525 | 0.0 | 44.21492 | 42-43 |
GCGTCGT | 18365 | 0.0 | 43.126495 | 10-11 |
CGTCGTG | 18520 | 0.0 | 42.510124 | 12-13 |
TGGTCGC | 13830 | 0.0 | 42.40085 | 42-43 |
AGCGTCG | 18925 | 0.0 | 42.27468 | 10-11 |
GTGGTCG | 14640 | 0.0 | 41.55298 | 40-41 |
GCCGTAT | 13530 | 0.0 | 41.406002 | 46-47 |
GTCGTGT | 20620 | 0.0 | 38.64234 | 12-13 |
CCGTATC | 14315 | 0.0 | 38.5518 | 48-49 |
CGTGTAG | 21155 | 0.0 | 38.129055 | 14-15 |