FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A005.C8DRAANXX.s_2.r_2.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A005.C8DRAANXX.s_2.r_2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26780491
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG543300.20287156049528743Illumina Single End PCR Primer 1 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC152300.062.428529
GATCGGA192300.058.7559551
AGAGCGT170100.056.0006688
ATCGGAA198750.055.2026562
TCGGAAG203250.053.1607973
AAGAGCG192700.053.1380167
CGGAAGA203450.051.7925224
CGCCGTA68450.049.89357446-47
TCGCCGT69900.048.98626744-45
GTCGCCG75350.047.89097644-45
GGTCGCC82400.044.5877942-43
GCCGTAT81700.042.93069546-47
TGGTCGC83100.042.78022442-43
GTGGTCG88100.042.27704240-41
CCGTATC84050.040.2791948-49
CGTATCA91150.038.08819248-49
TCGGTGG109300.036.5537638-39
CGGTGGT103950.036.3745238-39
CTCGGTG109950.035.76946336-37
TCTCGGT109350.035.3436-37