FastQCFastQC Report
Mon 18 Apr 2016
Sample-2.A006.C8LFMANXX.s_3.r_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-2.A006.C8LFMANXX.s_3.r_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52316898
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG7098241.3567776896864183Illumina Single End PCR Primer 1 (100% over 50bp)
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT907490.17346020782807114No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC1191500.0104.152679
GATCGGA1278450.0101.370691
AGAGCGT1234200.0101.28
ATCGGAA1299750.099.180842
TCGGAAG1307050.098.403883
CGGAAGA1299050.097.951624
AAGAGCG1293300.097.771267
GAAGAGC1625400.078.102146
GGAAGAG1941650.066.041695
TCGCCGT753650.057.7817644-45
CGCCGTA767250.057.45164546-47
GTCGCCG820700.057.2336144-45
GGTCGCC831150.056.92242-43
GCCGTAT800000.056.3939146-47
GTGGTCG857900.056.1061540-41
TGGTCGC824850.055.94645742-43
CCGTATC799050.055.3381448-49
CGTATCA822750.054.89033548-49
CGGTGGT904400.054.7211638-39
TCGGTGG968500.054.35478238-39