Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A002.C8DRAANXX.s_2.r_1.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28754600 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 4915 | 0.0 | 25.544413 | 46-47 |
TGCCGTC | 5150 | 0.0 | 24.147758 | 48-49 |
GCCGTCT | 5385 | 0.0 | 22.98346 | 48-49 |
ATGCCGT | 5835 | 0.0 | 21.924747 | 46-47 |
CTCGTAT | 5850 | 0.0 | 21.611576 | 42-43 |
CGTATGC | 6090 | 0.0 | 20.809586 | 44-45 |
CCGATGT | 6140 | 0.0 | 20.58967 | 32-33 |
GATCGGA | 12435 | 0.0 | 20.563105 | 1 |
TATCTCG | 6210 | 0.0 | 20.260424 | 38-39 |
ACCGATG | 6280 | 0.0 | 20.083298 | 32-33 |
TCTCGTA | 6340 | 0.0 | 19.612837 | 40-41 |
CACCGAT | 6470 | 0.0 | 19.447704 | 30-31 |
ATCGGAA | 13280 | 0.0 | 19.272568 | 2 |
TCGTATG | 6725 | 0.0 | 19.197771 | 42-43 |
CCGTCTT | 6685 | 0.0 | 18.960047 | 50-51 |
AGCTTTC | 126020 | 0.0 | 18.791277 | 1 |
GTCACCG | 6775 | 0.0 | 18.616104 | 28-29 |
TCGGAAG | 13865 | 0.0 | 18.330622 | 3 |
ATCTCGT | 6880 | 0.0 | 18.246408 | 40-41 |
AGCTTTT | 165520 | 0.0 | 18.127584 | 1 |