FastQCFastQC Report
Mon 18 Apr 2016
Sample-2.A012.C8LFMANXX.s_3.r_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-2.A012.C8LFMANXX.s_3.r_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43542862
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC1166410.26787628245474543TruSeq Adapter, Index 12 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA295800.051.4576231
ATCGGAA314300.048.5242232
TCGGAAG320900.047.4824523
CGGAAGA323600.047.214054
TATGCCG167500.045.25237746-47
TGCCGTC174950.043.34256748-49
GCCGTCT176500.042.99564748-49
ATGCCGT178300.042.64481746-47
CTCGTAT173500.042.50417342-43
CGTATGC179000.042.4613644-45
TCTCGTA177050.040.9461840-41
TCGTATG189850.040.30091542-43
ATCTCGT187850.038.35453440-41
AATCTCG186700.038.2402538-39
CCGTCTT199600.037.91554650-51
CGTCTTC204650.037.12529450-51
CGTCTGA254600.030.0982516-17
ACACGTC264700.029.18581212-13
AGAGCAC537350.029.174758
GTATGCC268500.028.62887444-45