FastQCFastQC Report
Mon 18 Apr 2016
Sample-2.A019.C8LFMANXX.s_3.r_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-2.A019.C8LFMANXX.s_3.r_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44617077
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT2298670.5151995949891562TruSeq Adapter, Index 19 (97% over 40bp)
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT829130.18583243362177224No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA432150.077.435731
ATCGGAA447450.074.5982742
TCGGAAG453350.073.545663
CGGAAGA453000.073.3122254
AGAGCAC657350.051.0647438
TATGCCG325850.050.46725548-49
TGCCGTC332150.049.34895350-51
GCCGTCT333850.049.2491450-51
CGTATGC335750.048.9878946-47
GAGCACA687550.048.8131189
AACGATC283400.048.6629438-39
ATGCCGT340000.048.42817348-49
CTCGTAT303850.048.1489144-45
TCTCGTA289800.047.8757642-43
TCGTATG346200.047.6379844-45
ACGATCT290500.047.3711938-39
ATCTCGT298350.046.3641642-43
CGTCTTC354200.046.319552-53
CCGTCTT354850.046.09213652-53
GATCTCG299800.046.0902340-41