Basic Statistics
Measure | Value |
---|---|
Filename | Sample-3.A006.C8H0KANXX.s_2.r_1.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 70954559 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC | 1985763 | 2.7986404650897767 | TruSeq Adapter, Index 6 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 252085 | 0.0 | 102.56935 | 1 |
ATCGGAA | 259210 | 0.0 | 99.75989 | 2 |
TCGGAAG | 260470 | 0.0 | 99.21856 | 3 |
CGGAAGA | 262745 | 0.0 | 98.30117 | 4 |
AGAGCAC | 308255 | 0.0 | 83.800415 | 8 |
GAGCACA | 308430 | 0.0 | 83.70469 | 9 |
GAAGAGC | 312135 | 0.0 | 82.811455 | 6 |
AAGAGCA | 353615 | 0.0 | 73.239334 | 7 |
GGAAGAG | 361085 | 0.0 | 71.75974 | 5 |
ATGCCGT | 232295 | 0.0 | 56.034058 | 46-47 |
GCCGTCT | 232485 | 0.0 | 55.92661 | 48-49 |
TCGTATG | 234020 | 0.0 | 55.805878 | 42-43 |
TCTCGTA | 232405 | 0.0 | 55.765907 | 40-41 |
CGCCAAT | 224190 | 0.0 | 55.505127 | 32-33 |
TATCTCG | 227400 | 0.0 | 55.397 | 38-39 |
TGCCGTC | 232200 | 0.0 | 55.138817 | 48-49 |
CGTATGC | 234130 | 0.0 | 54.92056 | 44-45 |
TATGCCG | 233870 | 0.0 | 54.84212 | 46-47 |
CTCGTAT | 233545 | 0.0 | 54.83414 | 42-43 |
CGTCTTC | 237110 | 0.0 | 54.802982 | 50-51 |