FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A005.C8DRAANXX.s_2.r_1.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A005.C8DRAANXX.s_2.r_1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26780491
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC1104530.4124382932336827TruSeq Adapter, Index 5 (100% over 50bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA220500.068.326081
ATCGGAA231300.065.590332
TCGGAAG235150.064.1367953
CGGAAGA238200.063.037534
TATGCCG155600.047.9930546-47
GCCGTCT158500.046.57076348-49
TGCCGTC160700.046.19239848-49
CTCGTAT157050.045.97113442-43
CGTATGC163450.045.82985744-45
ATGCCGT162300.045.6451946-47
TCTCGTA158500.044.04899240-41
TCGTATG170300.043.8791742-43
CCGTCTT174700.042.51043350-51
ATCTCGT167150.042.0186240-41
CGTCTTC178400.041.5120250-51
AGAGCAC363650.041.4796148
GATCTCG173450.040.39988738-39
GAGCACA380200.039.5959439
CGTCTGA198500.037.74066516-17
GAAGAGC413350.036.6361246