Basic Statistics
Measure | Value |
---|---|
Filename | Sample-2.A012.C8LFMANXX.s_3.r_1.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43542862 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC | 116641 | 0.26787628245474543 | TruSeq Adapter, Index 12 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 29580 | 0.0 | 51.457623 | 1 |
ATCGGAA | 31430 | 0.0 | 48.524223 | 2 |
TCGGAAG | 32090 | 0.0 | 47.482452 | 3 |
CGGAAGA | 32360 | 0.0 | 47.21405 | 4 |
TATGCCG | 16750 | 0.0 | 45.252377 | 46-47 |
TGCCGTC | 17495 | 0.0 | 43.342567 | 48-49 |
GCCGTCT | 17650 | 0.0 | 42.995647 | 48-49 |
ATGCCGT | 17830 | 0.0 | 42.644817 | 46-47 |
CTCGTAT | 17350 | 0.0 | 42.504173 | 42-43 |
CGTATGC | 17900 | 0.0 | 42.46136 | 44-45 |
TCTCGTA | 17705 | 0.0 | 40.94618 | 40-41 |
TCGTATG | 18985 | 0.0 | 40.300915 | 42-43 |
ATCTCGT | 18785 | 0.0 | 38.354534 | 40-41 |
AATCTCG | 18670 | 0.0 | 38.24025 | 38-39 |
CCGTCTT | 19960 | 0.0 | 37.915546 | 50-51 |
CGTCTTC | 20465 | 0.0 | 37.125294 | 50-51 |
CGTCTGA | 25460 | 0.0 | 30.09825 | 16-17 |
ACACGTC | 26470 | 0.0 | 29.185812 | 12-13 |
AGAGCAC | 53735 | 0.0 | 29.17475 | 8 |
GTATGCC | 26850 | 0.0 | 28.628874 | 44-45 |