Basic Statistics
Measure | Value |
---|---|
Filename | Sample-2.A005.C8LFMANXX.s_3.r_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47405891 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 137172 | 0.28935644306316277 | Illumina Single End PCR Primer 1 (100% over 50bp) |
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT | 90684 | 0.19129268132519647 | No Hit |
AGCTTTCTTTTGATAGAGCAGTTTTGAAACACTCTTTTTGTAAAATCTGC | 49228 | 0.10384363411711849 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGTC | 27260 | 0.0 | 88.5026 | 9 |
GATCGGA | 29550 | 0.0 | 85.69516 | 1 |
AGAGCGT | 30100 | 0.0 | 80.72543 | 8 |
ATCGGAA | 31545 | 0.0 | 79.620804 | 2 |
TCGGAAG | 32645 | 0.0 | 76.48227 | 3 |
CGGAAGA | 33245 | 0.0 | 74.34707 | 4 |
AAGAGCG | 33155 | 0.0 | 74.13036 | 7 |
CGCCGTA | 15875 | 0.0 | 53.431606 | 46-47 |
GTCGCCG | 17095 | 0.0 | 52.76851 | 44-45 |
TCGCCGT | 16025 | 0.0 | 51.891773 | 44-45 |
GGTCGCC | 18235 | 0.0 | 49.24102 | 42-43 |
TGGTCGC | 18420 | 0.0 | 48.051937 | 42-43 |
GCGTCGT | 25105 | 0.0 | 47.789383 | 10-11 |
CGTCGTG | 25260 | 0.0 | 47.485867 | 12-13 |
AGCGTCG | 25440 | 0.0 | 47.30037 | 10-11 |
GCCGTAT | 18485 | 0.0 | 46.72425 | 46-47 |
GTGGTCG | 19605 | 0.0 | 46.68827 | 40-41 |
CCGTATC | 18740 | 0.0 | 45.48351 | 48-49 |
GTCGTGT | 27330 | 0.0 | 44.019833 | 12-13 |
CGTGTAG | 27735 | 0.0 | 43.8167 | 14-15 |