Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
88983957 |
88983957 |
Not Truncated |
77270539 |
77306028 |
Truncated |
11713418 |
11677929 |
Too short to map |
362269 |
343348 |
Average length of truncated sequence |
68.86 |
69.83 |
|
Read 1 |
Read 2 |
Unique Alignments |
41016766 |
40669060 |
Multiple Alignments |
10775430 |
10669903 |
Failed To Align |
36829492 |
37301646 |
Paired |
34359246 |
34359246 |
Filtering
|
Di-Tag Count |
Valid Pairs |
13479427 |
Invalid Pairs |
20879819 |
Same Circularised |
1326386 |
Same Fragment Dangling Ends |
4687182 |
Same Fragment Internal |
10511940 |
Re-ligation |
3796438 |
Contiguous Sequence |
180685 |
Wrong Size |
377188 |
Total Pairs |
34359246 |
Di-tag length Distribution
De-duplication
Percentage uniques: 12.62
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
13479427 |
1700554 |
Cis-close (< 10Kbp) |
2226005 |
279083 |
Cis-far (> 10Kbp) |
5286795 |
664459 |
Trans |
5966627 |
757012 |