Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A006.C8DRAANXX.s_2.r_2.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34760244 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCGTA | 2265 | 0.0 | 26.531456 | 46-47 |
TCGCCGT | 2680 | 0.0 | 22.756056 | 44-45 |
GTCGCCG | 2775 | 0.0 | 22.19143 | 44-45 |
AGCTTTT | 195865 | 0.0 | 19.5175 | 1 |
GGTCGCC | 3650 | 0.0 | 17.605112 | 42-43 |
GCCGTAT | 3735 | 0.0 | 16.407959 | 46-47 |
AGCTTAA | 96060 | 0.0 | 15.961722 | 1 |
AGCTTTC | 159210 | 0.0 | 15.957521 | 1 |
TGGTCGC | 3925 | 0.0 | 15.916865 | 42-43 |
AATCCCG | 10315 | 0.0 | 15.6317625 | 40-41 |
AGCTTTG | 148580 | 0.0 | 15.401281 | 1 |
AGCTTTA | 122395 | 0.0 | 15.337113 | 1 |
AGCTTGT | 93390 | 0.0 | 15.258542 | 1 |
GAGCGTC | 10845 | 0.0 | 14.922695 | 9 |
AGCTTAT | 108365 | 0.0 | 14.874004 | 1 |
AGCTTCT | 177420 | 0.0 | 14.839477 | 1 |
GTGGTCG | 4395 | 0.0 | 14.688544 | 40-41 |
CGAAATC | 10250 | 0.0 | 14.569941 | 54-55 |
AGCTTGC | 68380 | 0.0 | 14.513591 | 1 |
CCGTATC | 4165 | 0.0 | 14.499698 | 48-49 |