Basic Statistics
Measure | Value |
---|---|
Filename | Sample-3.A012.C8H0KANXX.s_2.r_1.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 88983957 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC | 31869651 | 35.81505259425584 | TruSeq Adapter, Index 12 (100% over 50bp) |
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC | 177616 | 0.19960451972258325 | TruSeq Adapter, Index 12 (100% over 50bp) |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATATCGTATGC | 133311 | 0.14981464580182693 | TruSeq Adapter, Index 12 (98% over 50bp) |
NATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC | 96625 | 0.10858698945024438 | TruSeq Adapter, Index 12 (98% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 3382325 | 0.0 | 117.91089 | 1 |
ATCGGAA | 3418835 | 0.0 | 116.633385 | 2 |
TCGGAAG | 3419875 | 0.0 | 116.523476 | 3 |
CGGAAGA | 3420890 | 0.0 | 116.42375 | 4 |
AGAGCAC | 3471530 | 0.0 | 114.782616 | 8 |
GAGCACA | 3469190 | 0.0 | 114.77865 | 9 |
GAAGAGC | 3473870 | 0.0 | 114.766014 | 6 |
GGAAGAG | 3505445 | 0.0 | 113.75041 | 5 |
AAGAGCA | 3513040 | 0.0 | 113.47283 | 7 |
ATGCCGT | 3393675 | 0.0 | 58.718147 | 46-47 |
GCCGTCT | 3393405 | 0.0 | 58.689472 | 48-49 |
GCACACG | 3425050 | 0.0 | 58.553898 | 10-11 |
AATCTCG | 3373545 | 0.0 | 58.551945 | 38-39 |
ACGTCTG | 3417675 | 0.0 | 58.53363 | 14-15 |
TCTCGTA | 3382410 | 0.0 | 58.53316 | 40-41 |
TCGTATG | 3411370 | 0.0 | 58.52262 | 42-43 |
ACACGTC | 3426395 | 0.0 | 58.50255 | 12-13 |
TGCCGTC | 3393870 | 0.0 | 58.47272 | 48-49 |
GTATGCC | 3410540 | 0.0 | 58.401936 | 44-45 |
TATGCCG | 3403580 | 0.0 | 58.384167 | 46-47 |