Basic Statistics
Measure | Value |
---|---|
Filename | Sample-1.A006.C8DRAANXX.s_2.r_1.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34760244 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 5230 | 0.0 | 23.380253 | 46-47 |
TGCCGTC | 5895 | 0.0 | 20.641935 | 48-49 |
GCCGTCT | 5870 | 0.0 | 20.527111 | 48-49 |
CGCCAAT | 5945 | 0.0 | 20.164272 | 32-33 |
ATGCCGT | 6095 | 0.0 | 20.110949 | 46-47 |
CGTATGC | 6155 | 0.0 | 19.96159 | 44-45 |
CTCGTAT | 6230 | 0.0 | 19.33845 | 42-43 |
TATCTCG | 6225 | 0.0 | 18.730116 | 38-39 |
GTCACGC | 6540 | 0.0 | 18.511835 | 28-29 |
TCTCGTA | 6575 | 0.0 | 18.05227 | 40-41 |
TCGTATG | 6930 | 0.0 | 17.29922 | 42-43 |
GATCGGA | 14730 | 0.0 | 16.994066 | 1 |
ATCTCGT | 7225 | 0.0 | 16.881098 | 40-41 |
ACGCCAA | 7355 | 0.0 | 16.783974 | 32-33 |
AGCTTTT | 206425 | 0.0 | 16.45748 | 1 |
AGCTTTC | 154020 | 0.0 | 16.310648 | 1 |
ATCGGAA | 15665 | 0.0 | 15.958209 | 2 |
CCGTCTT | 7945 | 0.0 | 15.616129 | 50-51 |
CGGAAGA | 16225 | 0.0 | 15.516399 | 4 |
TCGGAAG | 16120 | 0.0 | 15.507731 | 3 |