FastQCFastQC Report
Mon 18 Apr 2016
Sample-2.A019.C8LFMANXX.s_3.r_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-2.A019.C8LFMANXX.s_3.r_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44617077
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG1716360.384686787079306Illumina Single End PCR Primer 1 (100% over 50bp)
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT939840.21064580272705896No Hit
AGCTTTCTTTTGATAGAGCAGTTTTGAAACACTCTTTTTGTAAAATCTGC486850.10911741259966447No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC359750.081.513819
AGAGCGT386500.076.333868
GATCGGA415050.074.04011
ATCGGAA429550.071.116712
AAGAGCG423000.070.773667
TCGGAAG432300.070.210043
CGGAAGA436100.068.900074
CGCCGTA200000.052.34782846-47
GTCGCCG217000.052.05833444-45
TCGCCGT200600.051.6128344-45
GGTCGCC227600.049.6598642-43
TGGTCGC228350.048.29809642-43
GTGGTCG238000.047.7957240-41
GCCGTAT225400.047.09560446-47
CCGTATC228550.045.84602448-49
CGGTGGT258000.044.93812638-39
TCGGTGG272700.044.7843838-39
CGTATCA238850.044.5291548-49
CGTCGTG329100.044.1296512-13
GCGTCGT331250.044.08421310-11