FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A019.C8DRAANXX.s_2.r_2.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A019.C8DRAANXX.s_2.r_2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28583413
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA25500.033.83261546-47
TCGCCGT29050.030.82464844-45
GTCGCCG30650.030.5743944-45
GGTCGCC36100.026.61785742-43
GCCGTAT37100.024.85796446-47
GAGCGTC97550.024.7631869
TGGTCGC38900.022.86648242-43
GTGGTCG43500.022.1581540-41
GATCGGA126100.022.1291891
AGAGCGT114150.021.3705488
CCGTATC42500.020.78955848-49
ATCGGAA135450.019.9427282
TCGGAAG139150.019.113143
AAGAGCG133700.019.0022147
CGGAAGA140050.018.4805094
CGTATCA50650.018.44284648-49
CGGTGGT57100.017.08895338-39
TCGGTGG59650.017.00676338-39
AGCTTTT1661200.016.7264081
CTCGGTG62650.016.09742436-37