FastQCFastQC Report
Mon 18 Apr 2016
Sample-2.A005.C8LFMANXX.s_3.r_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-2.A005.C8LFMANXX.s_3.r_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47405891
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC2059270.4343911603728743TruSeq Adapter, Index 5 (100% over 50bp)
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT805430.1699008251949109No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA312350.088.414371
ATCGGAA333050.082.874372
TCGGAAG347400.079.5167853
CGGAAGA356050.077.583754
TATGCCG275000.050.3009946-47
TGCCGTC280850.048.90390448-49
GCCGTCT281650.048.57488348-49
CTCGTAT274900.048.3386842-43
CGTATGC288150.048.10861644-45
ATGCCGT288100.047.72467446-47
TCTCGTA271050.047.5983840-41
AGAGCAC595750.046.9878
TCGTATG296800.046.6261342-43
ATCTCGT283200.045.66132740-41
GAGCACA628950.044.487819
CCGTCTT312400.043.9175650-51
CGTCTGA317750.043.654816-17
CGTCTTC314450.043.56502550-51
GATCTCG294400.043.48972338-39
ACACGTC320550.043.449812-13