FastQCFastQC Report
Mon 18 Apr 2016
Sample-2.A005.C8LFMANXX.s_3.r_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-2.A005.C8LFMANXX.s_3.r_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47405891
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG1371720.28935644306316277Illumina Single End PCR Primer 1 (100% over 50bp)
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT906840.19129268132519647No Hit
AGCTTTCTTTTGATAGAGCAGTTTTGAAACACTCTTTTTGTAAAATCTGC492280.10384363411711849No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC272600.088.50269
GATCGGA295500.085.695161
AGAGCGT301000.080.725438
ATCGGAA315450.079.6208042
TCGGAAG326450.076.482273
CGGAAGA332450.074.347074
AAGAGCG331550.074.130367
CGCCGTA158750.053.43160646-47
GTCGCCG170950.052.7685144-45
TCGCCGT160250.051.89177344-45
GGTCGCC182350.049.2410242-43
TGGTCGC184200.048.05193742-43
GCGTCGT251050.047.78938310-11
CGTCGTG252600.047.48586712-13
AGCGTCG254400.047.3003710-11
GCCGTAT184850.046.7242546-47
GTGGTCG196050.046.6882740-41
CCGTATC187400.045.4835148-49
GTCGTGT273300.044.01983312-13
CGTGTAG277350.043.816714-15