FastQCFastQC Report
Mon 18 Apr 2016
Sample-1.A002.C8DRAANXX.s_2.r_1.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-1.A002.C8DRAANXX.s_2.r_1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28754600
Sequences flagged as poor quality0
Sequence length125
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG49150.025.54441346-47
TGCCGTC51500.024.14775848-49
GCCGTCT53850.022.9834648-49
ATGCCGT58350.021.92474746-47
CTCGTAT58500.021.61157642-43
CGTATGC60900.020.80958644-45
CCGATGT61400.020.5896732-33
GATCGGA124350.020.5631051
TATCTCG62100.020.26042438-39
ACCGATG62800.020.08329832-33
TCTCGTA63400.019.61283740-41
CACCGAT64700.019.44770430-31
ATCGGAA132800.019.2725682
TCGTATG67250.019.19777142-43
CCGTCTT66850.018.96004750-51
AGCTTTC1260200.018.7912771
GTCACCG67750.018.61610428-29
TCGGAAG138650.018.3306223
ATCTCGT68800.018.24640840-41
AGCTTTT1655200.018.1275841
Produced by FastQC (version 0.11.4)