Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
70954559 |
70954559 |
Not Truncated |
58000756 |
57958038 |
Truncated |
12953803 |
12996521 |
Too short to map |
445321 |
422309 |
Average length of truncated sequence |
68.33 |
69.35 |
|
Read 1 |
Read 2 |
Unique Alignments |
52564749 |
52344645 |
Multiple Alignments |
12979739 |
12908077 |
Failed To Align |
4964750 |
5279528 |
Paired |
44061736 |
44061736 |
Filtering
|
Di-Tag Count |
Valid Pairs |
16389479 |
Invalid Pairs |
27672257 |
Same Circularised |
1414759 |
Same Fragment Dangling Ends |
8148030 |
Same Fragment Internal |
12729367 |
Re-ligation |
4166946 |
Contiguous Sequence |
222556 |
Wrong Size |
990599 |
Total Pairs |
44061736 |
Di-tag length Distribution
De-duplication
Percentage uniques: 29.97
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
16389479 |
4912154 |
Cis-close (< 10Kbp) |
2798506 |
838257 |
Cis-far (> 10Kbp) |
8277453 |
2480624 |
Trans |
5313520 |
1593273 |