Basic Statistics
Measure | Value |
---|---|
Filename | Sample-2.A019.C8LFMANXX.s_3.r_1.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44617077 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT | 229867 | 0.5151995949891562 | TruSeq Adapter, Index 19 (97% over 40bp) |
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT | 82913 | 0.18583243362177224 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 43215 | 0.0 | 77.43573 | 1 |
ATCGGAA | 44745 | 0.0 | 74.598274 | 2 |
TCGGAAG | 45335 | 0.0 | 73.54566 | 3 |
CGGAAGA | 45300 | 0.0 | 73.312225 | 4 |
AGAGCAC | 65735 | 0.0 | 51.064743 | 8 |
TATGCCG | 32585 | 0.0 | 50.467255 | 48-49 |
TGCCGTC | 33215 | 0.0 | 49.348953 | 50-51 |
GCCGTCT | 33385 | 0.0 | 49.24914 | 50-51 |
CGTATGC | 33575 | 0.0 | 48.98789 | 46-47 |
GAGCACA | 68755 | 0.0 | 48.813118 | 9 |
AACGATC | 28340 | 0.0 | 48.66294 | 38-39 |
ATGCCGT | 34000 | 0.0 | 48.428173 | 48-49 |
CTCGTAT | 30385 | 0.0 | 48.14891 | 44-45 |
TCTCGTA | 28980 | 0.0 | 47.87576 | 42-43 |
TCGTATG | 34620 | 0.0 | 47.63798 | 44-45 |
ACGATCT | 29050 | 0.0 | 47.37119 | 38-39 |
ATCTCGT | 29835 | 0.0 | 46.36416 | 42-43 |
CGTCTTC | 35420 | 0.0 | 46.3195 | 52-53 |
CCGTCTT | 35485 | 0.0 | 46.092136 | 52-53 |
GATCTCG | 29980 | 0.0 | 46.09023 | 40-41 |