Basic Statistics
Measure | Value |
---|---|
Filename | Sample-2.A019.C8LFMANXX.s_3.r_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44617077 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 171636 | 0.384686787079306 | Illumina Single End PCR Primer 1 (100% over 50bp) |
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT | 93984 | 0.21064580272705896 | No Hit |
AGCTTTCTTTTGATAGAGCAGTTTTGAAACACTCTTTTTGTAAAATCTGC | 48685 | 0.10911741259966447 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGTC | 35975 | 0.0 | 81.51381 | 9 |
AGAGCGT | 38650 | 0.0 | 76.33386 | 8 |
GATCGGA | 41505 | 0.0 | 74.0401 | 1 |
ATCGGAA | 42955 | 0.0 | 71.11671 | 2 |
AAGAGCG | 42300 | 0.0 | 70.77366 | 7 |
TCGGAAG | 43230 | 0.0 | 70.21004 | 3 |
CGGAAGA | 43610 | 0.0 | 68.90007 | 4 |
CGCCGTA | 20000 | 0.0 | 52.347828 | 46-47 |
GTCGCCG | 21700 | 0.0 | 52.058334 | 44-45 |
TCGCCGT | 20060 | 0.0 | 51.61283 | 44-45 |
GGTCGCC | 22760 | 0.0 | 49.65986 | 42-43 |
TGGTCGC | 22835 | 0.0 | 48.298096 | 42-43 |
GTGGTCG | 23800 | 0.0 | 47.79572 | 40-41 |
GCCGTAT | 22540 | 0.0 | 47.095604 | 46-47 |
CCGTATC | 22855 | 0.0 | 45.846024 | 48-49 |
CGGTGGT | 25800 | 0.0 | 44.938126 | 38-39 |
TCGGTGG | 27270 | 0.0 | 44.78438 | 38-39 |
CGTATCA | 23885 | 0.0 | 44.52915 | 48-49 |
CGTCGTG | 32910 | 0.0 | 44.12965 | 12-13 |
GCGTCGT | 33125 | 0.0 | 44.084213 | 10-11 |