FastQCFastQC Report
Mon 18 Apr 2016
Sample-2.A002.C8LFMANXX.s_3.r_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSample-2.A002.C8LFMANXX.s_3.r_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47111116
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC1491710.3166365237452664TruSeq Adapter, Index 2 (100% over 50bp)
AGCTTCTGAGAATGCTTCTGTCTAGAGTTTATATGAAGACAATCCCGTTT727250.15436908775415126No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA246200.078.502461
ATCGGAA265550.072.635022
TCGGAAG278800.069.164113
CGGAAGA284950.067.648984
TATGCCG205400.046.83797546-47
TGCCGTC212800.045.05570248-49
CCGATGT212350.044.77224732-33
GCCGTCT215200.044.6361648-49
CTCGTAT212900.044.5170742-43
ATGCCGT216550.044.4950146-47
CACCGAT215100.044.33814230-31
CGTATGC217800.044.17135244-45
ACCGATG215250.044.12758632-33
TATCTCG211650.043.71158238-39
GTCACCG220700.043.3074728-29
TCTCGTA214950.043.20657340-41
TCGTATG233250.041.60243642-43
TCACCGA229400.041.53535530-31
ATCTCGT223950.041.32409340-41
CGATGTA233750.040.68604334-35