Basic Statistics
Measure | Value |
---|---|
Filename | Sample-2.A012.C8LFMANXX.s_3.r_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43542862 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 75109 | 0.17249440333067678 | Illumina Single End PCR Primer 1 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGTC | 24340 | 0.0 | 52.713463 | 9 |
CGCCGTA | 9395 | 0.0 | 48.925392 | 46-47 |
GATCGGA | 28450 | 0.0 | 48.242157 | 1 |
AGAGCGT | 27130 | 0.0 | 48.081863 | 8 |
GTCGCCG | 10365 | 0.0 | 47.705048 | 44-45 |
TCGCCGT | 9725 | 0.0 | 47.54053 | 44-45 |
ATCGGAA | 30285 | 0.0 | 45.258663 | 2 |
TCGGAAG | 31085 | 0.0 | 43.672756 | 3 |
AAGAGCG | 30705 | 0.0 | 43.64601 | 7 |
GGTCGCC | 11710 | 0.0 | 43.08949 | 42-43 |
CGGAAGA | 31470 | 0.0 | 42.815384 | 4 |
GCCGTAT | 11530 | 0.0 | 41.104473 | 46-47 |
TGGTCGC | 11950 | 0.0 | 40.929485 | 42-43 |
GTGGTCG | 12690 | 0.0 | 40.342728 | 40-41 |
CCGTATC | 12075 | 0.0 | 38.1886 | 48-49 |
CGTATCA | 13100 | 0.0 | 36.47232 | 48-49 |
CGGTGGT | 15035 | 0.0 | 34.97655 | 38-39 |
TCGGTGG | 15930 | 0.0 | 34.84127 | 38-39 |
CTCGGTG | 16560 | 0.0 | 32.836784 | 36-37 |
TCTCGGT | 16280 | 0.0 | 32.68893 | 36-37 |