Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
44617077 |
44617077 |
Not Truncated |
27558024 |
27658661 |
Truncated |
17059053 |
16958416 |
Too short to map |
603703 |
578991 |
Average length of truncated sequence |
67.04 |
67.71 |
|
Read 1 |
Read 2 |
Unique Alignments |
34317701 |
34096685 |
Multiple Alignments |
7620595 |
7554610 |
Failed To Align |
2075078 |
2386791 |
Paired |
27507786 |
27507786 |
Filtering
|
Di-Tag Count |
Valid Pairs |
21592114 |
Invalid Pairs |
5915672 |
Same Circularised |
288201 |
Same Fragment Dangling Ends |
502256 |
Same Fragment Internal |
1577602 |
Re-ligation |
2509885 |
Contiguous Sequence |
182456 |
Wrong Size |
855272 |
Total Pairs |
27507786 |
Di-tag length Distribution
De-duplication
Percentage uniques: 87.18
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
21592114 |
18824646 |
Cis-close (< 10Kbp) |
4679346 |
4055746 |
Cis-far (> 10Kbp) |
14807202 |
12927006 |
Trans |
2105566 |
1841894 |