MultiQC logo

Introduction

Docs / Index

How to install MultiQC on your system

Introduction

MultiQC is a reporting tool that parses results and statistics from bioinformatics tool outputs, such as log files and console outputs. It helps to summarise experiments containing multiple samples and multiple analysis steps. It’s designed to be placed at the end of pipelines or to be run manually when you’ve finished running your tools.

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 Sample 3Sample 2Sample 1Tool 1Tool 2Tool 3Tool 4Steps of analysisSamplesinexperimentMultiQC parsestool outputsSingle Human-readableHTML reportMultiQC

Note

MultiQC doesn’t do any analysis for you - it just finds results from other tools that you have already run and generates nice reports.

When you launch MultiQC, it recursively searches through any provided file paths and finds files that it recognises. It parses relevant information from these and generates a single stand-alone HTML report file.

In addition to the HTML report, MultiQC generates a directory of parsed data files with consistent data structure. This can be useful for further downstream analysis.